Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5480 107 5e-18 >seq5480 Length=41483 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || ||||| |||||||| |||| ||||| || |||||| ||||| Sbjct 2594 AAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCAGACACAATCGAAAAC 2653 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || || || || ||| ||| || || | |||||| Sbjct 2654 GTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCAGCAGAGGTTGATCTTC 2713 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | |||||||| | || | | || |||||| | || || ||||| Sbjct 2714 GCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAACATTCAAAAGGAGTCG 2773 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 2774 ACCCTGCACCTTGT 2787 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| || |||||||||||| || ||||| || || | || || || ||| Sbjct 2354 CAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC--- 2410 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | ||| || ||| ||||||||||| || || || ||| ||| ||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || | || |||||||| || || ||| | || ||||| | || ||| | ||||||||| Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | ||||| ||||| || || || || || Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGT 2559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181309542844644