Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2599 174 1e-38 seq5480 120 3e-22 >seq2599 Length=48712 Score = 174 bits (192), Expect = 1e-38 Identities = 819/1286 (64%), Gaps = 45/1286 (3%) Strand=Plus/Minus Query 146569 TGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAG 146628 || || ||||| ||||||||||| ||||||||||| || ||||| ||| ||| | Sbjct 37961 TGAGCTGCAGGCTTTGTGCGCAAGTAATACATGCCTGTCTTGAGACCAAGCTCCCAGCCG 37902 Query 146629 TGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGAT 146688 | | ||| || || |||| | || | | || |||| | || || ||||| Sbjct 37901 TAAAAGTGCATTGATGTCAGTTTACTATAATTTGTTTCAGCCATGTGAACGTTTAACGAC 37842 Query 146689 TGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC 146748 |||||||| || || ||||| ||| ||||| ||||||| || || || ||| | Sbjct 37841 TGGCTTTGGTCGATAAAAGCACCGCGATCGGCTGCCATCTTGATGATA---TTCTTCTGC 37785 Query 146749 ---ATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTT 146805 || ||||| | || ||| ||| ||| | ||||||||| | | ||| Sbjct 37784 GGGATCTCCCACACAGTGCGGTAAAGCAGCTTGAGATCTTCTGGAATA---TTGAGCTTT 37728 Query 146806 TGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGT 146865 || | ||| || |||| || | | ||| || || | | | | ||| Sbjct 37727 TGGACAGAACCGTTGTAGGCCACCAGTTCGTTACGCATCGCTTCACTCCACAATCCCAGT 37668 Query 146866 TTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGT 146925 | |||| || | || |||| || || || || ||||||||||| | || ||| || Sbjct 37667 TCTGTGAGATCTTTAAGCAAATGGTGGTTCACTACCTGAAACTCGCCTGACAACACTCGG 37608 Query 146926 CTGAG-ATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGC 146984 | ||| ||| ||||| || ||| | | ||||| || ||||||||||| | ||| || || Sbjct 37607 C-GAGCATATACATTACTTGTGTACGCCTCAATGGATTCATTATTGCCAAGTATCTGTGC 37549 Query 146985 CGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGAT 147044 || | ||| || |||||| |||| | | || | | |||||||| || | Sbjct 37548 GGTCGATGCCGTGGGCATGGGAGCCAATAGAA--GACTGTT-----CCGTACGC-CG--T 37499 Query 147045 GTTGTCC----TTCA----AAGTTTG--CCAGTCCCACATCGACGAGGGCGTCACGTTCC 147094 ||||| | |||| |||| | ||||||||| | || | || || || || Sbjct 37498 GTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAAGAGAAGTAGGGGTGACACCCC 37439 Query 147095 ACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTC 147154 |||| || ||||| | | || | | | || |||| | | || ||| | | Sbjct 37438 ACATATCATACTGCAATATACCCTTAGAGACAGGCGAGCCAACATATGTCTCGTATGTGC 37379 Query 147155 CGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGA 147214 | || || || | |||||||||||| || | ||| || ||||| || ||||| | Sbjct 37378 CTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCACCGTAGTAAATTGTTTCAAATA 37319 Query 147215 TTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGG 147274 | | |||||| || | | ||||| ||| ||| |||| | ||||| | | ||| | Sbjct 37318 TCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAGGTAGACGCATTATGATAAAAG 37259 Query 147275 CATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCG 147334 |||| || | ||| || | || | || || || ||||| || ||||| |||| | Sbjct 37258 CATCTGCAAGACCTTGTACGCCAATACCAATTGGACGATGACGTTTGTTGCCACGCTCAG 37199 Query 147335 CGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTT 147394 | || | || || | | | ||||||||| ||||| ||||| || |||| || Sbjct 37198 CTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGTTAAGGTTTCGTGTCACAAGTT 37139 Query 147395 TAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGT 147454 | || | ||| | ||| | ||| || ||| || || | |||| || |||| Sbjct 37138 TCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCCTCCTTGACAA--ACCGATTG-- 37083 Query 147455 TCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC-GTCGCTGTACTGCACG 147513 | || | ||| || ||||| ||||| || | || |||| | || ||||| | Sbjct 37082 --AGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCGGGAGACGA-GTACTCAATA 37026 Query 147514 ATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGA 147573 | ||| | || | || || || || ||| | ||||| |||||||| || || Sbjct 37025 ACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATTGCTCTTACGG 36966 Query 147574 TTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA 147633 || || || || ||| ||||||| ||||| ||| || || | || | |||| ||| Sbjct 36965 TTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTGGCTATCAAGAATA 36906 Query 147634 A---ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTAC 147690 ||| | || | ||| || ||||| | | ||||||||| || ||||||| Sbjct 36905 GCATACCAA---AGTTTCTGAGCGGGCACCTGTCGTAAATAGCGGCCTTCCATTTCGTAT 36849 Query 147691 CGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGC 147750 ||||||||| |||||||| || || |||| ||| | || |||||| | Sbjct 36848 TTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTTAAACCAGGACACGAGTTG 36789 Query 147751 GGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACC 147810 |||||||| || ||||| |||| | || || | |||||||||||||| || | | Sbjct 36788 GGACACATAAGTGACCAACTGTCATTATCGGCGACTCTACGCATAAACAGATCAGGAATC 36729 Query 147811 CACAGCGCGTACATAAGATCGCGCGC 147836 || || || || | ||||| ||||| Sbjct 36728 CAAAGTGCATAGAAGAGATCACGCGC 36703 >seq5480 Length=41483 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | ||||||| || ||||||||||| || || ||| || ||| ||| Sbjct 2559 ACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCG 2500 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||| | |||| ||||||||||| || || || ||||| || || || | Sbjct 2499 AGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTC-TTG 2441 Query 132035 ATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 | | || || | ||| | ||| | || ||| | ||||| || |||| ||| | ||||| Sbjct 2440 AATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTT 2381 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | ||| |||||||| Sbjct 2380 GCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 || || ||||| || |||||||| | ||| || || || || || || || | | Sbjct 1697 TCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAA 1638 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || |||||||||||||| || || ||||| ||||| || || ||| ||||| | | Sbjct 1637 ATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTT 1578 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | || || | ||||| ||||||| || | ||||| || || || || || | | Sbjct 1577 TCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACG 1518 Query 132113 AAAATCTGCAT 132123 ||||||||||| Sbjct 1517 AAAATCTGCAT 1507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| | ||| || |||||||||||| || || | Sbjct 2772 GACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCG 2713 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || || || ||||| || ||||| ||| || || | Sbjct 2712 AAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGAATCTTGGCCTTAACG 2653 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | ||||||||| || | || | ||| || || ||||| ||||| Sbjct 2652 TTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTTTCCGGTCAGCGTTTTC 2593 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 2592 ACAAAAATTTGCAT 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476410046243040