Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq19961 120 4e-21 seq17630 104 3e-16 seq2303 104 3e-16 seq22060 86.0 9e-11 >seq19961 Length=25414 Score = 120 bits (132), Expect = 4e-21 Identities = 218/315 (69%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 1455962 AAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACA 1456021 |||| || || || | ||||| || | || |||||||| |||||| || || |||| Sbjct 14203 AAGACGTGCAGGTGACGGAGGCGCGCTGCTTCTACGGGTTTCAGATCATGATGGAGAACA 14262 Query 1456022 TCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGG 1456081 | || || |||| || || ||| | || |||||||| ||| || || ||| | Sbjct 14263 TTCATTCGGAAATGTATTCTCTCTTACTCAACACCTACATCACCGATCCCCAGGAGCGCG 14322 Query 1456082 ACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGA 1456141 |||||||||| ||||||||| ||| |||| | | | || |||||||||||||| Sbjct 14323 ACCACCTCTTCAACGCCATCGAGACGATGCCATGCATCAAAAAGAAGGCCGACTGGGCCC 14382 Query 1456142 TGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG- 1456200 | |||||| || || | | | || || | |||||| |||||| || || | Sbjct 14383 TTGCCTGGATCGGGAACGA-CGACGCCAC-CTACGGCGAGCGCGTCGTCGCGTTCGCGGC 14440 Query 1456201 CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGG 1456260 ||||||||||||||| ||| || |||| | | ||||| ||| | ||||| ||||| Sbjct 14441 CGTCGAGGGCATCTTCTTCAGCGGAGCTTTCGCCTCGATCTTCTGGATGAAGAAACGCGG 14500 Query 1456261 CCTCATGCCCGGTCT 1456275 ||| | ||||| || Sbjct 14501 ACTCCTACCCGGGCT 14515 >seq17630 Length=3584 Score = 104 bits (114), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||||||||| |||||| || | | |||| ||| || Sbjct 228 ATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACTGGTATTTCATC------GAAGGCC 281 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||| ||||| || |||||||| |||| | |||| | | |||||| Sbjct 282 ATGTCAATCATGAATTCGTTCGTAAACGACATCTTCGAGAGAATCGCCGCTGAGGCCTCC 341 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || | | || |||||| | || ||| | | || ||| | ||||| ||||| Sbjct 342 CGTCTATCCCACTACAACAAAAGGTCAACCATCACCTCTCGGGAGGTTCAGACGGCCGTC 401 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | || || ||||||| ||||||||| || ||||| |||| Sbjct 402 AGGCTTCTGCTCCCTGGTGAGCTGGCCAAGCACGCCGTTTCTGAGGGTACCA 453 >seq2303 Length=85521 Score = 104 bits (114), Expect = 3e-16 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||||| ||||||||||| ||||| |||||||| |||| || |||| | ||||| Sbjct 52773 AAGGCCATGTCCATCATGAACTCATTTGTGAACGACATCTTCGAACGGATCGCCGCCGAG 52714 Query 725025 GCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGA 725082 || ||||| || ||| | ||||||| | ||||| | | ||||| |||||| Sbjct 52713 GC--GTCGCGACTCTCGCATTACAACAAGAGATCGACGATTACCTCACGCGAAGTCCAGA 52656 Query 725083 CCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | |||||| | ||| | | | || || ||||| | ||| || || ||||||||||| Sbjct 52655 CGGCCGTGAGGCTGCTGCTCCCTGGAGAGCTGGCGAAGCATGCAGTTTCCGAGGGCAC 52598 Score = 96.9 bits (106), Expect = 5e-14 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||| |||||||| | ||||||||| ||| || || || || || || | | Sbjct 56802 ATCTATAAGGTGCTTAGGCAGGTGCATCCC-GATACG--GGTATTTCGTCGAA---GGCT 56749 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||| ||||| |||||||| |||| || |||| | ||||| Sbjct 56748 ATGTCGATCATGAACTCCTTTGTAAACGACATATTCGAACGGATCGCTGCTGAGGCTTCG 56689 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||| | ||| || || | | || || ||||||||||||| Sbjct 56688 CGTCTGGCTCACTACAATAGGCGATCGACTATAACCTCACGTGAAGTCCAGACCGCCGTC 56629 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || | | | ||| |||||||| | |||||| ||||| || || || Sbjct 56628 AGACTACTGCTACCCGGTGAACTGGCAAAGCACGCTGTCTCGGAAGGTAC 56579 >seq22060 Length=60276 Score = 86.0 bits (94), Expect = 9e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || ||||| ||||||| | | ||||| | ||||||| ||||| | ||| ||| Sbjct 12863 AACGGCGTCGCGTCGCCGATTTCGCCCTTGTTCGAGGCCACTTTGCCTTGCAGGCACTCG 12804 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 || | | ||| |||||||||||||| |||||||| || |||||||| | ||| |||||| Sbjct 12803 ATAAGATGGCCGATGGTCATGCGCGAAGGGATGGCATGTGGGTTGATGATAATATCGGGC 12744 Query 1600640 GT 1600641 || Sbjct 12743 GT 12742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174554600141768