Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5480 118 1e-21 >seq5480 Length=41483 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || |||||| |||||||||||||| | |||||| || | || || Sbjct 2560 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTC 2501 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||| |||||||| || || | ||||| ||||| | |||| || ||||||||| Sbjct 2500 GAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTG 2441 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | | || | | |||||||| | || ||||| | ||| || ||||| Sbjct 2440 AATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTT 2381 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||| || || |||||||| Sbjct 2380 GCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || | | ||| || | || || |||||||| ||||| || Sbjct 2770 CTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAA 2711 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || |||||| || ||||| ||| | | Sbjct 2710 GATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGAATCTTGGCCTTAACGTT 2651 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || |||||||||| |||||||| || || |||| |||||||| Sbjct 2650 TTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTTTCCGGTCAGCGTTTTCAC 2591 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 2590 AAAAATTTGCAT 2579 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 35512 ACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAA 35571 |||||| || | | |||| ||| | ||| || || || || |||||||| ||| || Sbjct 2107 ACCACGCAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAG 2048 Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631 || || | || |||||||| || ||||| || || | |||||||| || | |||| Sbjct 2047 TGTGCGACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAAT 1988 Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691 | ||||||||| ||| || ||| | || | | ||||||| || ||||||||| Sbjct 1987 ACCCTCCTTGTCTTGGATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTC 1928 Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| || || || || | || || || ||||| ||||| Sbjct 1927 CAATGTGATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450603342561120