Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5480 145 8e-30 >seq5480 Length=41483 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | |||||||| || ||||||||||| || ||||| || || Sbjct 1277 CCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAG 1218 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || |||||||| ||||||||||| | ||||||||| ||||| Sbjct 1217 AGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGG 1158 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || |||||| || || || | || || || ||| ||| Sbjct 1157 ATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACG 1098 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| ||||| || || || || || ||||| ||||| ||||||||||| Sbjct 1097 TCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCATTTT 1048 Score = 140 bits (154), Expect = 3e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| ||||| || || || |||||||||||||||||||| || |||| | || || Sbjct 2788 CACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTC 2729 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| ||||| || || ||||| | |||||| |||||||| ||||| || || ||||| Sbjct 2728 GAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTG 2669 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || || || || | |||||| |||| ||||| || || || || || || Sbjct 2668 AATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTT 2609 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||||| || ||||||||||| Sbjct 2608 TCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||| |||||| ||||| || ||||||| | |||| || ||| || Sbjct 1715 ACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCC 1656 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || ||||| | |||||| |||||||| || ||||| ||||| ||||| Sbjct 1655 AGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGG 1596 Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || ||| ||| || | | |||| ||||| | || || ||||||||||||||||| Sbjct 1595 ATCTTTGTTTTCAC-GTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTT 1537 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || |||||||| ||||| Sbjct 1536 GCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 129 bits (142), Expect = 6e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | |||||| | ||| || || || || || ||||| ||||||||||| || | | Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| || || ||||||||||| || || || || | |||||| || || ||||| Sbjct 2517 AA-GGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGG 2459 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCA 134664 ||||| || || ||||||| | || || | | | | |||| |||||| | || | Sbjct 2458 AATGCCCTCCTTGTCTTGAA-TCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAA 2400 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||||||||| || || | ||||| ||||| || ||||| Sbjct 2399 CCTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || ||||||||||| || ||||| ||||| Sbjct 1505 CCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAG 1446 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || | || ||||| ||||| |||| | ||| ||||| || || Sbjct 1445 AGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGG 1386 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || |||||| ||| || || | |||||| || | || ||| Sbjct 1385 ATGCCCTCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACG 1326 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| ||||| ||||| ||||| | || || ||||| || ||||| Sbjct 1325 TCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || || || |||||| ||| || || |||||||||||| | ||| || || || Sbjct 2091 ACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTCC 2032 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 |||||||| || || ||||| | ||||||||||||||| || || || || || ||||| Sbjct 2031 AGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTGG 1972 Query 134625 ATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||||| |||| || | |||| ||||||| || |||||| || | || || || || Sbjct 1971 ATTTTAGTCTTGA-CGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTT 1913 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | || || ||||| |||||||| Sbjct 1912 GCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 104 bits (114), Expect = 2e-17 Identities = 119/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 ||| ||||||||||| || || || |||| |||||||||||| || | ||||| || || Sbjct 3150 GTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAAATGCCCTCCTT 3091 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAA 134676 || |||||||| |||| ||| | || ||||| ||| | ||||| ||||| || | Sbjct 3090 ATCCTGAATTTTAGCCTTGA---CGTTCGATGGTGTCAGACAACTCCACTTCGAGCGTGA 3034 Query 134677 TGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||| || |||| | |||| || |||||||||||| Sbjct 3033 TGGTCTTTGCGGTGAGTGTTTCCACAAAAATTTGCATT 2996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505185096605280