Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2599 459 4e-124 seq19961 96.9 5e-15 >seq2599 Length=48712 Score = 459 bits (508), Expect = 4e-124 Identities = 1000/1489 (67%), Gaps = 11/1489 (1%) Strand=Plus/Minus Query 68357 TTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGT 68416 |||| |||| |||| |||||||| || | | | ||| || ||||| || | || | Sbjct 37992 TTTTGTCCTG-TCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAGTAAT 37934 Query 68417 ACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAAT 68476 |||| || || || ||||| || ||| ||||| || ||||| ||| ||||| || Sbjct 37933 ACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTACTAT 37874 Query 68477 AACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTAT 68536 || ||| || || || |||| || | ||| || ||||| ||||| ||||| || | || Sbjct 37873 AATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGCGAT 37814 Query 68537 CTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTT 68596 | || ||||| || || ||| |||| || || || ||||| | ||| ||| | | | Sbjct 37813 CGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCAGCT 37754 Query 68597 TGATATCATCTGGAAGGCTCGTATTTTGAATGGATCCACCATCGGATATAATTATATTCT 68656 ||| ||| ||||||| | ||||| | || || | || | | | || Sbjct 37753 TGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCACCAGTTCGTTAC 37694 Query 68657 TGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTA 68716 ||| | ||| |||||||| || || | | || |||| | ||| | || |||| Sbjct 37693 GCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTCACTA 37634 Query 68717 TTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 68776 ||||| || || || ||||||| |||| || | |||||| || || | || | | Sbjct 37633 CCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCTCAATGG 37574 Query 68777 ATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAAC 68836 |||||||||| || || || || || || ||||| || ||||| || |||| | | || Sbjct 37573 ATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATAGAAGAC 37514 Query 68837 TATTTCTAAGACCATGTGTTATG--ATTTTATCTTTTAGATGTTTCCAATCCCAAAGATC 68894 | || | | || ||||| || ||||| |||| || | ||| ||||||||| Sbjct 37513 TGTTCCGTACGCC--GTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAAGAGA 37456 Query 68895 AGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATT 68954 || || ||| ||| | ||| || || | || || ||| || || ||| Sbjct 37455 AGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCGAGCCAAC 37396 Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 |||||| || || | ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 37395 ATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCACCGTA 37336 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||||||||| || ||||| || || || || |||||| | |||||||| || Sbjct 37335 GTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAGGTAG 37276 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | | | | ||||| |||||||| | || || || |||||||| || || | ||| | Sbjct 37275 ACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACGATGACG 37216 Query 69135 CTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAG 69194 || || || |||||||| || | || ||||| ||| ||| |||||||| ||||| Sbjct 37215 TTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGTTAAG 37156 Query 69195 ATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTAT 69254 ||||| || | ||| ||| || |||| ||| | || || | || || | Sbjct 37155 GTTTCGTGTCACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCCTCCTT 37096 Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 |||||| ||| || |||| ||| || |||||||| ||||| | |||| | | | Sbjct 37095 GACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCGGGAGACGA 37036 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 || | || | |||||||||| |||| ||| || || || || | ||||| ||||| Sbjct 37035 GTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATT 36976 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||||| |||||| || |||||||| || ||| |||| || |||||||||||||| Sbjct 36975 GCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTGGCT 36916 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTT--GTAACGCTTCTCT 69492 || | ||||| | ||||| | ||| | | ||| | || || || Sbjct 36915 ATCAAGAATAGCATACCAAAGTTTCTGAGCGGGCA--CCTGTCGTAAATAGCGGCCTTCC 36858 Query 69493 TTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGA 69552 |||| |||| | || | | || || || |||||||| || || |||||| Sbjct 36857 ATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTTAAACCAGGA 36798 Query 69553 CATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGA 69612 || || |||||||| | |||||| |||| ||| |||| |||||| ||| Sbjct 36797 CACGAGTTGGGACACATAAGTGACCAACTGTCATTATCGGCGACTCTACGCATAAACAGA 36738 Query 69613 TCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtt 69671 || ||||||||||| || ||| |||||||| | | | || |||||| | || ||||| Sbjct 36737 TCAGGAATCCAAAGTGC-ATAGAAGAGATCACGCGCACGATGTTCTTCGATGCCGGTATT 36679 Query 69672 ttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 69731 |||| || ||||| || || | ||| || |||||||| || ||||| || || | Sbjct 36678 TTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGATAAATAGCAAA 36619 Query 69732 GACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCT 69791 | || || | ||||||||| ||||| || | || | |||||| ||||| || || | Sbjct 36618 CGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTATTGTATACGCG 36559 Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||||| || | |||||||| || | |||||||| |||| |||||| Sbjct 36558 TAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATAA 36510 Score = 98.7 bits (108), Expect = 1e-15 Identities = 322/491 (66%), Gaps = 22/491 (4%) Strand=Plus/Minus Query 70018 GCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC 70077 ||||| | ||||| |||||| | || ||||| || |||||||| | || || || Sbjct 36150 GCGTGTATAAACCACTTTTCACTCATCAAGTTGTAAGTGTCAATAGCCGCATCAATGTCG 36091 Query 70078 CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTA 70137 ||||| || | || || ||||||| ||||||||| || ||||| || ||| Sbjct 36090 GTGCCGTGAATACCAACTGCTACTCGCATCAGCATATGCTGTGGCCGTTCCACTACTTTT 36031 Query 70138 TTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAA 70197 | || ||||||| || ||| ||| ||| ||||| || || |||||||| || Sbjct 36030 TCGTTGATTTTCAGCAAGTAGGATCGTTCTAGAGTACGGAATCCGAAATAGTTATAGTTG 35971 Query 70198 AAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCC 70257 ||||| | | ||| | ||| | | || || |||||| | || | ||| | Sbjct 35970 AAGTCACGATTGTACACGATAGCGGCATCAAGCCGATCCTTGT------TAGCCATAACG 35917 Query 70258 ATAACAGTAGGTG-------AGATAATCGGAGATCGTT-TACCATTTTTAGGATTA-ACA 70308 | | ||||||| | || ||||| |||| | |||| ||| | | ||| Sbjct 35916 ACATT-GTAGGTGTCCTCCGAAATCATCGGC-ATCGGACTGGCATTCTTACTCTGAGACA 35859 Query 70309 T-AGTTGAATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATT 70367 | | | | | ||| | || || |||| | |||| || |||||||| | ||| Sbjct 35858 TGAAGCGCAACATGCTTAC--TATCTCGGAAAATTGCTTTTGGGTCTCCTTGTGAAGATT 35801 Query 70368 TGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGC 70427 ||| ||||| || | || ||||| | |||||||||||||||| || || ||||| Sbjct 35800 TGAAATGGCGATACGAGCGGCTAGGACCGCATAGTCAGGATGTTTAGTTGTCATTGTAGC 35741 Query 70428 TGCTATTTCCGCAGCTAACGT-ATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTT 70486 ||| |||| || || || || ||||| ||| ||||||| |||||| || || |||| Sbjct 35740 CGCTGTTTCAGCGGC-AAGGTCATCTAGTTCCTTAGTTGTTACTCCGGCGTAAAGACCTT 35682 Query 70487 GAATAACTTTC 70497 | || || ||| Sbjct 35681 GGATTACCTTC 35671 >seq19961 Length=25414 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 || || || || ||||||||| ||| || || || ||||| | |||||||| || | Sbjct 13640 TTCTCGTTAACGATTCCATCAGAAGCCGCGAAGAACGCCAAAATATGTTTAAGGAATTCG 13581 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 ||| | ||| | | | | ||||||| |||||||||| | ||| || || ||| Sbjct 13580 CGTTCTTGGGGCTTTAGCCTTTGCCAGTCAGCCATATCTTTTGCCAAATCGACCTCCTCA 13521 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATT 40183 | |||||||||||||| | ||||| |||||||| |||| || || | || | || Sbjct 13520 GTAGTCCAAAACGACGCTTGGGCCTTCTTGTACATCCTCCAGATGTCGGGGTACTCAATC 13461 Query 40184 GGAAAAATAACAAATCTATTTGGATTTT 40211 || || | ||||| | ||| ||||||| Sbjct 13460 GGGAATAGCACAAAGCGATTGGGATTTT 13433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686618890140960