Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2939 102 6e-17 >seq2939 Length=42873 Score = 102 bits (112), Expect = 6e-17 Identities = 251/378 (66%), Gaps = 2/378 (1%) Strand=Plus/Plus Query 40858 GGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAAT 40917 |||| || || ||||| || || || || || || |||| ||| || || ||||| || Sbjct 15043 GGGAGGAGGGCGATCTCGGCCCCGTATACGGCTTCCAGTGGCGTCACTTCGGAGCTGCAT 15102 Query 40918 ATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAA-TTACAGTGCGTTATA 40976 | | |||| || | || || || || | || | || ||| |||| | |||| Sbjct 15103 ACAGCGATATGCACGCCGACTACACGGATCAGGGCGTTGACCAAATTACCCAGA-TTATC 15161 Query 40977 GATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACG 41036 || ||| | | |||| ||| ||| || || || || | || ||||| || Sbjct 15162 GACACGCTCAGGGTTAATCCGGATGACCGCCGCATTATTTTATCTGCTTGGAATGTCTCG 15221 Query 41037 GACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAAT 41096 ||| | | |||||| | ||||| || || | | ||||| |||||| ||| Sbjct 15222 GACTTGAAGAAGATGGCGCTTCCACCGTGCCACTGCCTGGCGCAGTTCTACGTTGCCAAC 15281 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 ||||| |||| ||||||||||| ||| | | |||||||| ||||| || ||||| Sbjct 15282 GGTGAGTTGTCGTGTCAATTGTACCAACGCAGTGCCGACATGGGCCTAGGTGTGCCGTTC 15341 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCT 41216 ||||| || || |||||||||||| |||| || || ||| ||| | | || ||| Sbjct 15342 AACATTGCCTCGTACGCTCTGCTCACGCATATCATCGCTCACTATACTGGTCTTAAGCCT 15401 Query 41217 GGTGAATTTGTTCACACG 41234 || || ||||| || ||| Sbjct 15402 GGGGATTTTGTCCATACG 15419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397292447352820