Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2599 194 1e-44 seq5480 132 4e-26 >seq2599 Length=48712 Score = 194 bits (214), Expect = 1e-44 Identities = 989/1553 (64%), Gaps = 69/1553 (4%) Strand=Plus/Minus Query 130436 GCCGGCTTGGTGCGCAAATAATACATGCCTGTTTTGAGTCCAATTTTGTGTCCATAATTG 130495 || ||||| |||||||| |||||||||||||| ||||| |||| | || ||| | Sbjct 37955 GCAGGCTTTGTGCGCAAGTAATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAG 37896 Query 130496 TGGAT-GCTGCACATTGTTTGGTAATTGGGTTGCGCCACGAATATGTTGAGCGATTGCGA 130554 || || | || || | | ||||| | || |||| | | ||| | ||| || Sbjct 37895 TGCATTGATGT-CAGTTTACTATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCT 37837 Query 130555 TTGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTC---AT 130611 ||| || |||||||| || | || || ||||| | || || | || || | | || Sbjct 37836 TTGGTCGATAAAAGCACCGCGATCGGCTGCCATCTTGA---TGATATTCTTCTGCGGGAT 37780 Query 130612 CTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGCAATCGA----TT 130667 |||||| | || ||| || | | | | || || || || || || Sbjct 37779 CTCCCACACAGTGCGGTAAAGCAGCTTGAGATCTTCTGGAAT-------ATTGAGCTTTT 37727 Query 130668 GAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTACAATCCAAGCT 130727 | || |||||||| ||| | | |||||| ||||| || | ||||||| || | Sbjct 37726 GGACAGAACCGTTGTAGGCCACCAGTTCGTTACGCATCGCTTCACTCCACAATCCCAGTT 37667 Query 130728 GTACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTC 130787 | |||||||| | |||||| | || | | ||||| || || | || || || | Sbjct 37666 CTGTGAGATCTTTAAGCAAATGGTGGTTCACTACCTGAAACTCGCCTGACAACACTCGGC 37607 Query 130788 TAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTG 130847 | | || | || || ||| ||| |||| |||||| || ||||| | ||| ||||| | Sbjct 37606 GAGCATATACATTACTTGTGTACGCCTCAATGGATTCATTATTGCCAAGTATCTGTGCGG 37547 Query 130848 TAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTG-ATT 130906 | | ||| ||||||||| |||| || ||| || || | ||||| | ||| | | Sbjct 37546 TCGATGCCGTGGGCATGGGAGCCAATAGAAGACTGTTCCGTACGCCGTG--TTGTGCAAT 37489 Query 130907 TTTCGCTTCAATT-CATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATC 130965 |||| ||| || | | ||||| ||||| ||||| ||||| ||||| ||||||||| Sbjct 37488 TTTCACTTTAAGTGCGTCCCAGTCCCAAAGAGAAGTAGGGGTGACACC---CCACATATC 37432 Query 130966 AAATTGTAGTATGCCTTTA----CTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTT 131021 | | || | ||| || ||| | |||| | | || | | ||||| | |||| Sbjct 37431 ATACTGCAATATACCCTTAGAGACAGGCGAGCCAACAT----ATGTCTCGTATGTGCCTT 37376 Query 131022 CGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTT 131081 | || ||| || || ||| ||||| || || ||||| ||||| ||||| || | Sbjct 37375 CAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCACCGTAGTAAATTGTTTCAAATATCT 37316 Query 131082 GTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGT 131141 ||| || | || | |||| ||| ||| |||| | ||||| |||||||| | Sbjct 37315 TTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAGGTAGACGCATTATGATAAAAGCAT 37256 Query 131142 CTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAAC 131201 |||| ||||| |||| |||| || | || | ||| | || | |||| | Sbjct 37255 CTGCAAGACCTTGTACGCCAATACCAATTGGACGATGACGTTTGTTGCC---ACGCTCAG 37199 Query 131202 ATTCGGTG---GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTT 131258 ||| | | || ||| | ||| ||||| |||||||| | || || |||| || Sbjct 37198 CTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGTTAAGGTTTCGTGTCACAAGTT 37139 Query 131259 GTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGAT 131318 || || ||| ||||| | ||| || | || || || ||||| ||| Sbjct 37138 TCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCC---TCC---TTGACAAACCGAT 37085 Query 131319 TTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAA 131378 | | || || || |||||||| ||||| |||| || | | |||| || || Sbjct 37084 TGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCGGGAGACGAGTACTCAATAA 37025 Query 131379 TTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCAT 131438 ||| | || |||||| | ||| || || || | |||||||||||||| ||| | Sbjct 37024 CTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATTGCTCTTA-CGG 36966 Query 131439 TCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT- 131496 | ||||| |||||||| | ||| || || ||||| ||||| | || | |||| ||| Sbjct 36965 TTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTGGCTATCAAGAATA 36906 Query 131497 GTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGT-ATTGGCCGCGTT---TTTCGT 131552 | || || ||||| |||| | || || | || | | || || || |||||| Sbjct 36905 GCATACCAA-AGTTTCTGAGCGGGCACCTG----TCGTAAATAGCGGCCTTCCATTTCGT 36851 Query 131553 AATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC---CAAATTGGGACATT 131609 | |||||||||||| | ||||| | || || | | | ||| ||| ||||| Sbjct 36850 ATTTTTCGTACAACTTGTCAAACTCTTCTCC---CCAGCAGTCGCTTAAACCAGGACACG 36794 Query 131610 CGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCG 131669 | |||||||||| || ||||| | | || | | |||| |||||||| ||| | Sbjct 36793 AGTTGGGACACATAAGTGACCAACTGTCATTATCGGCGACTCTACGCATAAACAGATCAG 36734 Query 131670 GCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt 131729 | | ||| | || || || ||||| | || | ||||| | || || ||||| Sbjct 36733 GAATCCAAAGTGCATAGAAGAGATCACGCGCACGATGTTCTTCGATGCCGGTATTTTTTC 36674 Query 131730 tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGC 131789 || | | || || |||||||| | ||||| || |||| ||| | || | || | Sbjct 36673 GCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGATAAATAGCAAACGCAC 36614 Query 131790 CTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACA 131846 || | ||| || || || | ||||| || | | || ||||||||||| | || Sbjct 36613 CTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTATTGTATACGCGTAGCA 36554 Query 131847 TGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCA-TTGGCTCTG 131905 |||| | | ||| || | ||||||| || | || || ||| |||| || Sbjct 36553 TGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATAAGACCCAGCTGGC-CTA 36495 Query 131906 ATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 || ||| | ||| | |||||| || || | |||||||||| || || || Sbjct 36494 ATACAGTGTATGTTAATTCCAATGCCACCAGCAGATTTAGAGATGAGAGCACA 36442 >seq5480 Length=41483 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || |||||||| |||||||| | | |||| |||| || || || || || ||| || Sbjct 1697 TCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAA 1638 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||||||||||||||| || || | |||||||| || |||||| |||||| | || Sbjct 1637 ATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTT 1578 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| ||| || ||||| ||||| || | |||||| || || || ||||| Sbjct 1577 TCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACG 1518 Query 27237 AAGATTTGCAT 27247 || || ||||| Sbjct 1517 AAAATCTGCAT 1507 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||| ||| | || || || || ||||| ||||| || | Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||||||||| ||| | |||||||||||||| || ||||| Sbjct 2517 AAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGA 2458 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||| | || | |||| | ||||| | | ||||| Sbjct 2457 ATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACC 2398 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| || || ||||| || ||||| |||||| Sbjct 2397 TCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCATA 2350 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 27024 CCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATG 27083 |||||||| || | || | || | || || || |||||||| |||||||| | | Sbjct 2802 CCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGG 2743 Query 27084 TTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACA 27143 |||| | ||||||||||| || || ||| | || | | ||| || || ||||| | Sbjct 2742 GTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATG 2683 Query 27144 CCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCT 27203 ||||| ||||| |||||| || | | |||| | ||||||| | || || || Sbjct 2682 CCCTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCC 2623 Query 27204 AGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || | || || ||||| ||||||||||| |||||||| Sbjct 2622 AGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424759540025568