Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq29777 102 1e-16 seq2599 95.1 2e-14 >seq29777 Length=19435 Score = 102 bits (112), Expect = 1e-16 Identities = 276/420 (66%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 ||||||||||| ||||| | || ||||| || ||||| |||| | |||| ||| | Sbjct 14584 CCCGTACCGATGCCCTCAGCACCGTTCACCAGCACCATCGGTATGATCGGCAGATAATAA 14525 Query 181686 TCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAGG- 181744 || || || || | || ||| | ||||||||| | |||||| || |||| Sbjct 14524 TCCGGCTCGATTTTCTGGTTGTCGTCGAAAAGGTAGTTGAGCACCGGGTCGTCG-GAGGC 14466 Query 181745 ATCAAAGATCTTGCGAGCCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAAGC 181804 | ||| | | || || | | | | |||||||| || ||||| | | | || Sbjct 14465 AGGAAATAGACTTCGTGCTAACGGGCTCAACTTTGTGAAAATGTACCTGGGTGACGCAGA 14406 Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 ||| || |||||| || ||||| || || |||||| |||| || ||||| ||||| Sbjct 14405 GTCCTTGCCACCCTGCAGCCGCGTGCCGAACTGACCAATGGGCTGTAGCAGGTTGATGTT 14346 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTTCACC 181924 ||| || ||| | |||| || ||||| || | || ||| ||||| Sbjct 14345 GTTGCTGCCCACGAAGTTCTGCGCCAGGTTGACGATTGTCATCATGAGCGACTGCTCACC 14286 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||||||||| |||||| | || || || | | |||||||| |||||||||| ||| Sbjct 14285 GTGGTGGTAGGCTGACATTTCGGCGACGGAACCGGCCAACTGCGCCACCTTCACTTCCCG 14226 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| ||| | | ||| || | ||| || || | ||| |||||||||||| || Sbjct 14225 CTTGTCGTTTCTCTTGAAACATGTGAACAGTACCTTACGCTGTCCAGGCTTGAGACCGTC 14166 >seq2599 Length=48712 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | || |||||||||||| || |||| ||||||||| || | || | ||| || Sbjct 37035 GTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATT 36976 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||||| ||| || ||||||||||||||||| || || || || || || |||| Sbjct 36975 GCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTGGCT 36916 Query 111400 TTTGAGAATAGCCTTCCAAA 111419 | |||||||| | ||||| Sbjct 36915 ATCAAGAATAGCATACCAAA 36896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627766939094400