Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2599 98.7 1e-15 >seq2599 Length=48712 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 78189 TGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACT 78248 ||| ||||| || |||||||| ||||||||||| || ||| ||||| | |||||| Sbjct 37947 TGTGCGCAAGTAATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGA 37888 Query 78249 CGACAGCTTGGCCAGACTCGGGTTC-TCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | ||| || | | | | | ||| ||||| | ||| | ||||||| ||||||| Sbjct 37887 TGTCAG-TTTACTATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGA 37829 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 | | |||||||| ||||| ||||| | ||||| ||| ||||| |||||||| | | Sbjct 37828 TAAAAGCACCGCGATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAG 37769 Query 78368 TCCGGTAAATGGCCTTCAGCTCTTCCTGGA 78397 | ||||||| ||| || |||| ||||| Sbjct 37768 TGCGGTAAAGCAGCTTGAGATCTT-CTGGA 37740 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 20628 TTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCG 20687 ||||| | || || ||||| ||||| ||||||| |||||| | ||||| |||||||||| Sbjct 37760 TTTACCGCACTGTGTGGGAGATCCCGCAGAAGAATATCATCAAGATGGCAGCCGATCGCG 37819 Query 20688 GCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGG-AGAATCCGAGCCTGGCG 20746 | || | |||||||| ||||||| | || || ||||| ||| | | | | Sbjct 37820 GTGCTTTTATCGACCAAAGCCAGTCGTTAAACGTTCACATGGCTGAAACAAATTATAG-T 37878 Query 20747 AAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTAT 20806 || |||| || ||||| | ||||||||| | || |||||||| |||||||| || Sbjct 37879 AAACTGACATCAATGCACTTTTACGGCTGGGAGCTTGGTCTCAAGACAGGCATGTATTAC 37938 Query 20807 CTGCGGAC 20814 |||| || Sbjct 37939 TTGCGCAC 37946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548293295108160