Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq29777 149 7e-31 >seq29777 Length=19435 Score = 149 bits (164), Expect = 7e-31 Identities = 321/472 (68%), Gaps = 6/472 (1%) Strand=Plus/Minus Query 151857 TGGCACGTAGCAGCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGG 151916 |||||| | | ||| | || |||||||||||||| |||||||| ||||| | |||||| Sbjct 14603 TGGCACCTTGGTGCTCCAGCCCGTACCGATGCCCTCAGCACCGTTCACCAGCACCATCGG 14544 Query 151917 CACAATAGGGGCGTAAAACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAA 151976 | || || ||| | |||||||| | | || ||| || | | ||| || | Sbjct 14543 TATGATCGGCAGATAATAATCCGGCTCGATTTTCTGGTTGTCGTCGAAAAGGTAGTTGAG 14484 Query 151977 AACGGAATTGTCAGCCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGAT 152036 || | | ||| | | | |||| | ||| | | || ||||| ||||| || Sbjct 14483 CACCGGGTCGTCGGAGGCAGGAAATAGACTTCGTGCTAACGGGCTCAACTTTGTGAAAAT 14424 Query 152037 GTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGG 152096 ||| | || || | ||||||||||| ||||||||| || ||||| ||| ||| Sbjct 14423 GTACCTGGGTGACGCAGAGTCCTTGCCACCCTGCAGCCGCGTGCCGAACTGACCAATGGG 14364 Query 152097 CTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT-GC 152155 || || ||||||| ||||||| ||||||||| ||||| |||| || || || || Sbjct 14363 CTGTAGCAGGTTGATGTTGTTGCTGCCCACGAAGTTCTGCGCCAGGTTGACGATTGTCAT 14304 Query 152156 CCTG-CAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 | || |||| || ||||||||||| || || | | || |||| | | || |||||| Sbjct 14303 CATGAGCGACT-GC-TCACCGTGGTGGTAGGCTGACATTTCGGCGACGGAACCGGCCAAC 14246 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 ||||||||||||| ||| | | ||| |||||| ||| | | | | ||||| ||| Sbjct 14245 TGCGCCACCTTCACTTCCCGCTTGTCGTTTCTCTTGAAACATGTGAACAGTACCTTACGC 14186 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGA-GGAATCGAACGCTTGATGTCC 152325 || || || | |||||| | || ||| ||||| || || | | ||||| Sbjct 14185 TGTCCAGGCTTGAGACCGTCAATCA-ATGATGGAATGGATCGTTCGTTGTCC 14135 Score = 100 bits (110), Expect = 3e-16 Identities = 280/422 (66%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || ||||| ||||| ||||| |||| ||| | |||||| | || || | || | Sbjct 14584 CCCGTACCGATGCCCTCAGCACCGTTCACCAGCACCATCGGTATGATCGGCAGATAATAA 14525 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | | | | |||||| | ||| |||||||||| | ||| | | Sbjct 14524 TCCGGCTCGATTTTCTGGTTGTCGTCGAAAAGGTAGTTGAGCACCGGGTCGTCGGAGGCA 14465 Query 117272 TCGAATATG-TTCTTGGTCCACGGTGCTAGGCGA-GTGAAAATGTAACGAGAGCTTGCAG 117329 |||| ||| || | |||| ||| | ||||||||||| | | |||| Sbjct 14464 GGAAATAGACTTCGTGCTA-ACGG-GCTCAACTTTGTGAAAATGTACCTGGGTGACGCAG 14407 Query 117330 CATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGT 117389 ||||||||||| || ||||| ||||| || ||| | |||| | ||||| | || Sbjct 14406 AGTCCTTGCCACCCTGCAGCCGCGTGCCGAACTGACCAATGGGCTGTAGCAGGTTGATGT 14347 Query 117390 TGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT-ACCTTGGAGGCTCGCCTCA 117448 ||||| |||||| ||||| || |||| |||||| || || | | | ||| | |||| Sbjct 14346 TGTTGCTGCCCACGAAGTTCTGCGCCAGGTTGACGATTGTCATCAT-GAGCGACTGCTCA 14288 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || ||||| || || | | || || ||| | || |||| ||| |||||||||| || Sbjct 14287 CCGTGGTGGTAGGCTGACATTTCGGCGACGGAACCGGCCAACTGCGCCACCTTCACTTCC 14228 Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCA 117568 | | ||| |||||| || | | | ||||| ||||| | ||||| ||||| Sbjct 14227 CGCTTGTCGTTTCTCTTGAAACATGTGAACAGTACCTTACGCTGTCCAGGCTTGAGACCG 14168 Query 117569 TC 117570 || Sbjct 14167 TC 14166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546985047487200