Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5480 167 3e-36 seq29777 141 1e-28 >seq5480 Length=41483 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || |||||||| || ||||| || || || ||| | | Sbjct 1279 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTCT 1338 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| | ||||| |||||||||||||| || ||||| || || Sbjct 1339 GACACAATCGAGAATGTGAAAACAAAAATCCAGGACAAGGAGGGCATCCCTCCTGATCAA 1398 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || |||||| | ||||| | || ||||| | |||||||| Sbjct 1399 CAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATAAC 1458 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||||||||| || ||| | ||||||||||| || Sbjct 1459 ATCCAGAAGGAATCCACTCTTCACCTCGTCCTCCGTCTTCGCGGAGG 1505 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| ||||| || ||||| || ||||| || ||||||||| || | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||| | || ||||| ||||||||||| ||||| || ||||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || ||||| || |||||||||| ||| ||| | | || || || Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || ||||| || | || || || || || Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGTGCTTCGACTCCGTGGAGG 2577 Score = 145 bits (160), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTG-AGTCAG 27463 |||||||||||| ||||| ||| | || || ||||| ||||| || || || | || | Sbjct 1050 AATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGGCTC 1109 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 | |||| || | ||| | ||| | ||||| |||||||| ||||| || || || || | Sbjct 1110 G-GATACGATCGAAAACGTAAAGACAAAAATCCAGGACAAAGAGGGCATCCCGCCGGATC 1168 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | | |||||||| || || ||||| || || | || ||||| |||| |||| Sbjct 1169 AGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATTATA 1228 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||||||||| ||||| || ||| | ||||| ||||| || Sbjct 1229 ACATCCAGAAGGAATCCACCCTTCACCTCGTCCTCCGTCTCCGCGGAGG 1277 Score = 136 bits (150), Expect = 5e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || ||||||||||| || || | ||||| || | | Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| ||||||| || ||||||||||| ||||| || || ||| Sbjct 1943 GACACGATTGAAAACGTCAAGACTAAAATCCAAGACAAGGAGGGTATTCCCCCCGATCAG 2002 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || || || || || |||| ||| || || ||||| || Sbjct 2003 CAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACAAC 2062 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 |||| || ||| ||| || ||||| || | ||| | || ||| Sbjct 2063 ATCCAGAAAGAAAGCACGCTCCATCTGGTACTCCGTTTGCGTGGT 2107 Score = 104 bits (114), Expect = 3e-17 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| | || || |||| ||||| || || || || || |||| Sbjct 2996 AATGCAAATTTTTGTGGAAACACTCACCGCAAAGACCATCACGCTCGAAGTGGAGTTGTC 3055 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || | ||||||||||||||||| |||||||| ||| | || || || Sbjct 3056 TGACACCATCG--AACGTCAAGGCTAAAATTCAGGATAAGGAGGGCATTTCCCCTGATCA 3113 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGA 27560 ||||||||| || || || || || || |||||||| Sbjct 3114 GCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAGGA 3149 >seq29777 Length=19435 Score = 141 bits (156), Expect = 1e-28 Identities = 301/444 (68%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || ||||||||| || ||||| ||||||||| |||||| ||||| | | | | Sbjct 14145 CGATCCATTCCATCATTGATTGACGGTCTCAAGCCTGGACAGCGTAAGGTACTGTTCACA 14204 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 || |||||| ||| | | || |||||||||||||| || | || | ||| || Sbjct 14205 TGTTTCAAGAGAAACGACAAGCGGGAAGTGAAGGTGGCGCAGTTGGCCGGTTCCGTCGCC 14264 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCT 32142 || | ||||| |||||||| ||| ||||||| | || || |||||||| || Sbjct 14265 GAAATGTCAGCCTACCACCACGGTGAGCAGTCGCTCATGATGACAATCGTCAACCTGGCG 14324 Query 32143 CAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACC 32202 |||||||| || || || ||| | ||| | || |||| ||| ||||| || || Sbjct 14325 CAGAACTTCGTGGGCAGCAACAACATCAACCTGCTACAGCCCATTGGTCAGTTCGGCACG 14384 Query 32203 CGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC-CCGTCTCGCACC 32261 ||||| ||||||||||| ||||| || | ||||| ||||| || || | Sbjct 14385 CGGCTGCAGGGTGGCAAGGACTCTGCGTCACCCAGGTACATTTTCACAAAGTTGAGCCCG 14444 Query 32262 TTCGACGCGCAAG---ATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA 32318 || | | || ||| |||| | || || ||||| |||||||||| ||| ||| || Sbjct 14445 TTAG-CACG-AAGTCTATTTCCTGCC--TCCGACGACCCGGTGCTCAACTACCTTTTCGA 14500 Query 32319 TGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAA 32378 ||| ||| ||||||||| | || ||| | | |||||| | ||||||| Sbjct 14501 CGACAACCAGAAAATCGAGCCGGATTATTATCTGCCGATCATACCGATGGTGCTGGTGAA 14560 Query 32379 CGGTGCAGAAGGCATCGGAACGGG 32402 |||||| || |||||||| ||||| Sbjct 14561 CGGTGCTGAGGGCATCGGTACGGG 14584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570069700495680