Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5480 120 2e-22 >seq5480 Length=41483 Score = 120 bits (132), Expect = 2e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 |||||| | |||| ||||| ||||| ||||| ||||| ||||| || || || || Sbjct 1725 AAGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCG 1666 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 |||| || ||||| || || || || || | ||||||||| || || || | ||||| Sbjct 1665 ACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTC 1606 Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGG 34666 |||||| ||||||| ||||| ||| | ||| ||||| | ||| ||||| | | Sbjct 1605 TTTGTCTTGGATCTTT-GTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAG 1547 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| ||||| | || ||||| ||||||||||| Sbjct 1546 TAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 120 bits (132), Expect = 2e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||||||||| || |||||||| || || | ||||| || || || || || || Sbjct 2770 CTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAA 2711 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG- 34633 || || | ||| ||||| ||||| | |||||||| ||| ||| || | |||||| Sbjct 2710 GATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCT-TGAATCTTGGCCTTAACGT 2652 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||||||||| |||||| |||| || ||||| || ||||| | |||||||| Sbjct 2651 TTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTTTCCGGTCAGCGTTTTCA 2592 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 2591 CAAAAATTTGCAT 2579 Score = 114 bits (126), Expect = 8e-21 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || |||||||||||||| || || || ||||||| |||||||| |||||||| Sbjct 1241 TCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAA 1182 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-A 34634 || || | ||| || |||||||| | ||||| ||||| ||| |||||| || ||| Sbjct 1181 ATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGAT-TTTTGTCTTTACGTT 1123 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || || || || || || || | ||| ||||| || || || |||||||| || Sbjct 1122 TTCGATCGTATCCGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGAC 1063 Query 34695 AAAAATCTGCATGTT 34709 || || ||||| || Sbjct 1062 GAAGATTTGCATTTT 1048 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | || |||||| ||||| || |||||||| || || Sbjct 1505 CCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAG 1446 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| |||| || | ||| || |||||||| || | | |||||| || || || Sbjct 1445 AGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGG 1386 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||||||||| || | |||||||| | ||| || Sbjct 1385 ATGCCCTCCTTGTCCTGGAT-TTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGAC 1327 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| |||||||| ||||| | || ||||| || |||||||| Sbjct 1326 GTCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 111 bits (122), Expect = 1e-19 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | ||||| |||||| || |||||| |||||||| ||||| || | || || Sbjct 2568 AGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGA 2509 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || |||||||| || || || | |||||||||||| ||||| | |||||| Sbjct 2508 CCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCC 2449 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGT--CTTCGCTCTCCACTTCCACG 34665 |||||| ||| || || ||||| | ||| |||| ||| | ||| || || | Sbjct 2448 TTGTCT-TGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGG--CTCAACCTCGAGC 2392 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || || | |||||| || || |||||||| Sbjct 2391 GTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||| |||||| ||||| || || || ||||| || || ||||| || | ||||| Sbjct 2091 ACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTCC 2032 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| || || || || | |||||| || || || || | |||||||||||| | Sbjct 2031 AGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTGG 1972 Query 34618 ATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||| || || ||| | ||| ||||| | ||||| |||| || || || || Sbjct 1971 AT-TTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTT 1913 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || || || || ||||| Sbjct 1912 GCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314600089163012