Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5480 136 3e-27 >seq5480 Length=41483 Score = 136 bits (150), Expect = 3e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| |||||||| ||| | || || || || ||||| ||||| Sbjct 2579 ATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCA 2638 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || |||||||| || || ||||| || ||||| || Sbjct 2639 GACACAATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCAG 2698 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| ||||| || | ||||| | ||| |||| || |||||| Sbjct 2699 CAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAAC 2758 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 |||||||||||||||||| | || | || | |||||||| ||| Sbjct 2759 ATTCAAAAGGAGTCGACCCTGCACCTTGTGCTTCGTTTGCGCGGT 2803 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || |||||||| | |||||||| ||||| || || Sbjct 1507 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAGT 1566 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || ||| ||| || ||||||||||| ||||| |||||||||||| Sbjct 1567 GACACGATTGAAAACGTGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCAA 1626 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || ||| |||| ||| || ||| | ||| || || Sbjct 1627 CAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAAT 1686 Query 27168 ATTCAAAAGGA 27178 ||||| ||||| Sbjct 1687 ATTCAGAAGGA 1697 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || ||||| | ||||| || || || || || | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| || ||||| || || || ||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || ||||| | || || || ||| | || ||||||||| Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| ||| | ||| |||| Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGT 2559 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || ||| | ||||| || || || ||| || Sbjct 1051 ATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGGCTCG 1110 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || |||||| || |||||||| ||||| || || ||||| Sbjct 1111 GATACGATCGAAAACGTAAAGACAAAAATCCAGGACAAAGAGGGCATCCCGCCGGATCAG 1170 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | |||||||||||| | |||||| | |||| | || ||||| ||| Sbjct 1171 CAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATTATAAC 1230 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || ||||| || ||| Sbjct 1231 ATCCAGAAGGAATCCACC 1248 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 13/228 (6%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||| || |||| ||| | || || || |||||||| ||| Sbjct 2997 ATGCAAATTTTTGTGGAAACACTCACCGCAAAGACCATCACGCTCGAAGTGGAGTTGTCT 3056 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || ||||| |||||||| || || || ||||| | || ||||| Sbjct 3057 GACACCATCGAAC--GTCAAGGCTAAAATTCAGGATAAGGAGGGCATTTCCCCTGATCAG 3114 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| ||||| | || ||| | | || |||||| Sbjct 3115 CAGCGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGATGCACT--------TTACAAT 3166 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||||| | || |||| || |||||||| || ||| Sbjct 3167 ATTCA---GGAGTCGACCCTCCACCTGGTCTTTCGTTTGCGCGGAGGC 3211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434734842689280