Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2939 174 1e-38 >seq2939 Length=42873 Score = 174 bits (192), Expect = 1e-38 Identities = 352/520 (68%), Gaps = 2/520 (0%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCC 34380 ||| ||||| |||||| |||| | || || || || |||||||| |||| || || Sbjct 14978 GGGCGTGAATATCTGGAACGCCAATGGATCGCGGGAATTTCTGGATAAGCTCGGCTTTTT 15037 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 || |||||||||||||| | ||||| || ||||| ||||||||| | ||||| || || Sbjct 15038 CTCACGGGAGGAGGGCGATCTCGGCCCCGTATACGGCTTCCAGTGGCGTCACTTCGGAGC 15097 Query 34441 GGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGT 34500 | || | | | | || ||||| ||| ||||| | ||||| | | | Sbjct 15098 TGCATACAGCGATATGCACGCCGACTACACGGATCAGGGCGTTGACCAAATTACCCAGAT 15157 Query 34501 GATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCC 34560 |||||||| | | | || || |||||| | | || | | | || ||||| Sbjct 15158 TATCGACACGCTCAGGGTTAATCCGGATGACCGCCGCATTATTTTATCTGCTTGGAATGT 15217 Query 34561 GAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGC 34620 ||| | ||||||||| || ||||||||| ||| || |||||||| || Sbjct 15218 CTCGGACTTGAAGAAGATGGCGCTTCCACCGTGCCACTGCCTGGCGCAGTTCTACGTTGC 15277 Query 34621 GAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCC 34680 || || ||| |||| || || | || ||||| | |||||||| |||| ||||| Sbjct 15278 CAACGGTGAGTTGTCGTGTCAATTGTACCAACGCAGTGCCGACATGGGCCTAGGTGTGCC 15337 Query 34681 GTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA-TGTCGTGGGGTTGG 34739 |||||||||||| ||||||||||||||| | || |||||||| | | ||| || Sbjct 15338 GTTCAACATTGCCTCGTACGCTCTGCTCACGCATATCATCGCTCACTATACTGGTCTT-A 15396 Query 34740 TTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 |||||||| | || |||||| || || | ||| | ||| | | |||| || ||| Sbjct 15397 AGCCTGGGGATTTTGTCCATACGACTGGTGACACACATGTGTACTTAACCCACGTCCAGC 15456 Query 34800 GGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 ||| | || ||| || || || |||| ||||||||||| Sbjct 15457 CGCTTCAGAAACAGTTGAAAAGACAGCCACGACCGTTCCC 15496 Score = 174 bits (192), Expect = 1e-38 Identities = 352/520 (68%), Gaps = 2/520 (0%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 ||||||||||| |||| || || || ||| || | ||| ||| || |||| | | ||| Sbjct 15496 GGGAACGGTCGTGGCTGTCTTTTCAACTGTTTCTGAAGCGGCTGGACGTGGGTTAAGTAC 15437 Query 6566 ATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA-TGAGC 6624 | ||| | || || |||||| || | |||||||| || ||| | | ||||| Sbjct 15436 ACATGTGTGTCACCAGTCGTATGGACAAAATCCCCAGGCTT-AAGACCAGTATAGTGAGC 15378 Query 6625 GATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTC 6684 ||| || | ||||||||||||||| ||||||||||||||||| |||| |||||||| Sbjct 15377 GATGATATGCGTGAGCAGAGCGTACGAGGCAATGTTGAACGGCACACCTAGGCCCATGTC 15318 Query 6685 TCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744 | ||||| || | || || |||| ||| || || || |||||||| || || Sbjct 15317 GGCACTGCGTTGGTACAATTGACACGACAACTCACCGTTGGCAACGTAGAACTGCGCCAG 15258 Query 6745 GGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCAC 6804 | ||||||||| || ||||||||| | ||| ||||| || | | | Sbjct 15257 GCAGTGGCACGGTGGAAGCGCCATCTTCTTCAAGTCCGAGACATTCCAAGCAGATAAAAT 15198 Query 6805 GATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGC 6864 || | | |||||| || || | | | |||||||| | | | ||||| | Sbjct 15197 AATGCGGCGGTCATCCGGATTAACCCTGAGCGTGTCGATAATCTGGGTAATTTGGTCAAC 15138 Query 6865 TCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTG 6924 ||||| ||| ||||| || | | | | || | || || ||||| | |||||| Sbjct 15137 GCCCTGATCCGTGTAGTCGGCGTGCATATCGCTGTATGCAGCTCCGAAGTGACGCCACTG 15078 Query 6925 GAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAG 6984 ||| ||||| || ||||| | |||||||||||||| || || || |||| ||||| Sbjct 15077 GAAGCCGTATACGGGGCCGAGATCGCCCTCCTCCCGTGAGAAAAAGCCGAGCTTATCCAG 15018 Query 6985 AAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 ||| || || || || | |||| |||||| ||||| ||| Sbjct 15017 AAATTCCCGCGATCCATTGGCGTTCCAGATATTCACGCCC 14978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448073210854080