Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5480 178 3e-39 >seq5480 Length=41483 Score = 178 bits (196), Expect = 3e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| |||||||||||||| || || ||||||||||| |||| ||||| Sbjct 1499 CGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTG 1440 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||| |||||||| || ||||| || | ||||| |||||||| | || Sbjct 1439 CGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCC 1380 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||||||||| ||| |||||| || ||||| ||||||||| || || ||||| Sbjct 1379 TCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGG 1320 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || ||||| ||||| || || | |||||| Sbjct 1319 GTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || || ||||| ||||| ||||| || || | |||||| | |||||| Sbjct 2790 AGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCT 2731 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | | || ||||| || || | || ||||| || Sbjct 2730 TCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCT 2671 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||||||||| ||||| || || ||||| || ||||||||| Sbjct 2670 TGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTC 2611 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || ||||| | ||||| Sbjct 2610 TTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 143 bits (158), Expect = 6e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| ||||| || || |||||||||||||| | ||||||| || ||| Sbjct 1262 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCT 1203 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| || || || | | || || || || || | || || |||||| Sbjct 1202 TCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCC 1143 Query 211023 TGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| |||||| || ||||||||||| || || |||| ||| || ||||| || ||||| Sbjct 1142 TGGAT-TTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACGTCGAGGGTAATCGT 1084 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || | || || || || | |||||||| Sbjct 1083 CTTCCCAGTCAACGTTTTGACGAAGATTTGCATTTT 1048 Score = 138 bits (152), Expect = 3e-27 Identities = 168/228 (74%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| |||| || || || || || || ||||| || || ||||| ||||| | | Sbjct 2575 TCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAA 2516 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||| || || |||||||| || || ||||||||||| |||| Sbjct 2515 GGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAAT 2456 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAAC 211066 || |||||||| || ||||| || || ||||| |||||||| |||| ||||| Sbjct 2455 GCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTC---GCTTGGCTCAAC 2399 Query 211067 CTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| || || || || || ||||| || || || || | |||||| Sbjct 2398 CTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || ||| || || || || ||||| || ||||| Sbjct 1728 ACGAAGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGT 1669 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || ||||| ||||| || ||||| || || || ||||| || || || | || Sbjct 1668 GCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCC 1609 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||| ||||||||| |||||||||||| || |||||| | || || ||||| Sbjct 1608 CTCTTTGTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAG 1549 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || ||||| ||||| || || | |||||| Sbjct 1548 AGTAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 120 bits (132), Expect = 7e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || ||| ||||| |||||||| || || || || | |||||| Sbjct 2094 AGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCT 2035 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || ||||| ||||| || || || || || |||| || |||||||| Sbjct 2034 TCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCT 1975 Query 211023 TGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||| ||| || || |||||||| || ||||| | ||| ||||| | ||||| || Sbjct 1974 TGGAT-TTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGT 1916 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| ||||| || || | ||||| Sbjct 1915 CTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| || || ||||| || || |||||||| || || || || ||||| | || || || Sbjct 3153 TCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAAATGCCCTC 3094 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||| || || || ||||| ||||||||||||| || || ||||| || Sbjct 3093 CTTATCCTGAATTTTAGCCTTGACGTT--CGATGGTGTCAGACAACTCCACTTCGAGCGT 3036 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| |||||| | ||||| || | ||||| | |||||| Sbjct 3035 GATGGTCTTTGCGGTGAGTGTTTCCACAAAAATTTGCATT 2996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158650549395860