Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5480 107 2e-18 >seq5480 Length=41483 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| |||||||| ||||| || || || || ||| ||||| || | || || Sbjct 2091 ACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTCC 2032 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| ||||| || |||||||||||||| |||| ||| | | ||| ||||| | Sbjct 2031 AGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTGG 1972 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| |||| | | | ||| ||| || ||||| |||| ||||| | || Sbjct 1971 ATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTTG 1912 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || || |||||||| Sbjct 1911 CCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| || || || || | ||| || || | || || ||||| |||||||| || Sbjct 2770 CTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAA 2711 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | | ||||||||||| || | || ||| || || ||| | | | | | ||| Sbjct 2710 GATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCT-TGAATCTTGGCCTTAACGT 2652 Query 39213 CGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | || || || |||||| |||| ||||| | ||||| ||||||||||| | Sbjct 2651 TTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTTTCCGGTCAGCGTTTTCA 2592 Query 39272 CAAAGATTTGCATC 39285 |||| ||||||||| Sbjct 2591 CAAAAATTTGCATC 2578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429368842522532