Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq19961 104 2e-17 >seq19961 Length=25414 Score = 104 bits (114), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 |||| || | ||| | ||||| || | ||| ||||| || || || ||| || || Sbjct 13670 TGAAATTTGCTACCGTACCTTTCAACGAGGTTCTCGTTAACGATTCCATCAGAAGCCGCG 13611 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACT---GTTCGTCAGGCTTAAGTTTTTTCCAG 5024 || |||||||||| ||| | ||| | | | |||| | ||||| || ||| |||| Sbjct 13610 AAGAACGCCAAAATATG---TTTAAGGAATTCGCGTTCTTGGGGCTTTAGCCTTTGCCAG 13554 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 | | || |||||| | ||||| || || ||| ||||||||||||||||| || || Sbjct 13553 TCAGCCATATCTTTTGCCAAATCGACCTCCTCAGTAGTCCAAAACGACGCTTGGGCCTTC 13494 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||||||| ||| || || || |||| |||||| | || ||||| Sbjct 13493 TTGTACATCCTCCAGATGTCGGGGTACTCAATCGGGAATAGCACAAA 13447 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| |||||||| |||||||||||||| | || || | ||||| ||||| || Sbjct 14848 ACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTGCTCCATGAAATCGAAG 14789 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | ||| | ||| ||||| | |||| | ||||| | || || ||| Sbjct 14788 GGATTCTCGGAGTTCCATAATTTGTCACAGTCTAGATCGCTAAGCAGGTGATCGGCCACA 14729 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || || ||||| ||||||| |||||||| || || | | ||||| || || Sbjct 14728 AACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCATGGCAACAGGCAGAGCC 14669 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || | ||||| ||||| |||| ||| || || |||| || Sbjct 14668 TCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGATAAT 14625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426873869623412