Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2599 376 3e-99 seq19961 168 9e-37 >seq2599 Length=48712 Score = 376 bits (416), Expect = 3e-99 Identities = 985/1498 (66%), Gaps = 20/1498 (1%) Strand=Plus/Minus Query 76761 TTTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGA 76820 || ||||| || | |||| |||||||| || | || ||| || ||||| || | Sbjct 37997 TTCATTTTTGTCCTGTCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAG 37938 Query 76821 TAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTG 76880 || ||||| || || || ||||| || ||| ||||| || ||||| ||||||||| Sbjct 37937 TAATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTA 37878 Query 76881 GAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCT 76940 |||| | | || || || |||| || | |||||| ||||| ||||| ||||| || Sbjct 37877 CTATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCG 37818 Query 76941 CTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACT 77000 | ||| || ||||| || || || |||| || || || ||||| | ||| | ||| Sbjct 37817 CGATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGC 37758 Query 77001 TGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGAACCACCATCTGATATAATTGTA 77060 | |||| ||| ||||||| || ||||| | ||||| | | | | | Sbjct 37757 AGCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCACCAGTTCG 37698 Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 || || | ||| |||||||| | ||||| | | || |||| | ||| | || Sbjct 37697 TTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTC 37638 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 |||| ||||| || || ||||| |||| |||| || | |||||| || || | || Sbjct 37637 ACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCTCA 37578 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | |||||||| || || | || || || || || || || ||||| || |||| | Sbjct 37577 ATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATAGA 37518 Query 77241 AAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | ||| || | | || ||||| || ||||| |||| || | ||| ||||||| Sbjct 37517 AGACTGTTCCGTACGCC--GTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAA 37460 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 || | ||| ||| |||| | ||| || || | || || ||| || || | Sbjct 37459 GAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCGAGC 37400 Query 77359 CATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTC 77418 || |||||| || || | ||||| |||||||||||||| || ||||| || || | Sbjct 37399 CAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCAC 37340 Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 |||| ||||||||||| || ||||| || || || || |||||| ||||| || | Sbjct 37339 CGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAG 37280 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 | | | | | ||||| |||||||| | || || || ||||||||||| || | || Sbjct 37279 GTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACGAT 37220 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | || ||| | | |||||| || | || ||||| ||| || |||||||| | Sbjct 37219 GACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGT 37160 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 | || |||| || | ||| ||| || |||| ||| | || || | || | Sbjct 37159 TAAGGTTTCGTGTCACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCCT 37100 Query 77659 CTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGT 77718 | | |||||| || | |||| ||| || |||||||| ||||| | |||| | Sbjct 37099 CCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCGGGAG 37040 Query 77719 TGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTT 77778 | || | || | || ||||||| |||| ||| || || || || | ||||||| Sbjct 37039 ACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTT 36980 Query 77779 GGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCT 77838 | |||||||| || |||| ||||| || || ||| |||| || || |||||||||| Sbjct 36979 GATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCT 36920 Query 77839 GTGATTCGATAATAGATTTCCAGACGACTCT-----AGCTTTTATCATAGATTTGTATCG 77893 | || | ||||| | ||| | | ||| || | || || | || || Sbjct 36919 GGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGGCACCTGTCGTAAA----TAGCG 36865 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 | || |||| |||| || | | ||||| || |||||||| || || Sbjct 36864 GCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTTAA 36805 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCA---GTCACCATCTTCCTTAACTCGTTT 78010 ||||| || || || ||||| | |||||| |||| ||| | |||| Sbjct 36804 ACCAGGACACGAGTTGGGACACATAAGTGACCAACTGTCATTATCGGC---GACTCTACG 36748 Query 78011 CATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 |||||| |||||||| ||||| || ||| || ||||| || | | ||||||||| | Sbjct 36747 CATAAACAGATCAGGAATCCAAAGTGCATAGAAGAGATCACGCGCACGATGTTCTTCGAT 36688 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 || ||||| ||| || ||||| || || | ||| || |||||||| || ||||| Sbjct 36687 GCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGATA 36628 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 || || | | || || | |||||| || ||||| || | ||| | ||| || ||||| Sbjct 36627 AATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTATT 36568 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || || | | ||| || | ||||| || || ||||||||||| |||| |||||| Sbjct 36567 GTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATAA 36510 >seq19961 Length=25414 Score = 168 bits (186), Expect = 9e-37 Identities = 436/661 (66%), Gaps = 5/661 (1%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || ||||| |||||||| || |||||||||||||||| || || | Sbjct 14864 TTTCTGATACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTG 14805 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| ||||| || ||||| | | || | | ||| | | | ||| || || Sbjct 14804 CTCCATGAAATCGAAGGGATTCTCGGAGTTCCATAATTTGTCACAGTCTAGATCGCTAAG 14745 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 ||| ||| || || || || || || ||||| | || || ||||| || | | Sbjct 14744 CAGGTGATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCAT 14685 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 ||| || |||||||| || || ||||| |||||||||| || |||||| || || Sbjct 14684 GGCAACAGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGATAAT 14625 Query 48089 C-GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAA 48147 | | || | | |||| || || | | || ||| |||||| || || || | Sbjct 14624 CTGGTG-GATTCTCTCCTGGCTCGGCTTGTTGACCAGATGCCAAAACATCAAGCAGGCGA 14566 Query 48148 AATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCA 48207 | || ||| | || ||||| | || | |||||| | ||||| ||||| | Sbjct 14565 ACTCCGTATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCGGGTA 14506 Query 48208 TTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTT 48267 ||||| ||||| || | ||| || || | ||||||| ||| ||||| ||||| | Sbjct 14505 GGAGTCCGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATGCCCT 14446 Query 48268 CTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACC 48324 | |||||||| || ||| | | ||| ||||| |||| |||| || ||||| Sbjct 14445 CGACGGCCGCGAACGCGACGACGCGCTCGCCGTAGGTGGCGTCGTCGTTCCCGATCCAGG 14386 Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 | ||||| || |||||||| || | || ||||| || || || || || ||||| Sbjct 14385 CAAGGGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAGAGGT 14326 Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 || || | | ||| | | ||| || | | ||| ||| ||||||||| || | Sbjct 14325 GGTCGCGCTCCTGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAGAATACATTTCCGAAT 14266 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 |||| || || || |||||||| ||||| || || | ||| || || | ||| || | Sbjct 14265 GAATGTTCTCCATCATGATCTGAAACCCGTAGAAGCAGCGCGCCTCCGTCACCTGCACGT 14206 Query 48505 C 48505 | Sbjct 14205 C 14205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694375615032960