Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2599 425 8e-114 >seq2599 Length=48712 Score = 425 bits (470), Expect = 8e-114 Identities = 996/1493 (67%), Gaps = 10/1493 (1%) Strand=Plus/Minus Query 75356 TTTATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGA 75415 || ||||| || | |||| || ||||| || | | ||| || ||||| || | Sbjct 37997 TTCATTTTTGTCCTGTCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAG 37938 Query 75416 TAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTG 75475 || ||||| || || || ||||| || ||| ||||| || ||||| ||| ||||| Sbjct 37937 TAATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTA 37878 Query 75476 GAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCT 75535 |||| | | || || || |||| || | |||||| ||||| ||||| ||||| || Sbjct 37877 CTATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCG 37818 Query 75536 CTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACT 75595 | ||| || ||||| || || || |||| || || || ||||| | ||| | ||| Sbjct 37817 CGATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGC 37758 Query 75596 TGTTTGATATCATCTGGAAGATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTA 75655 | |||| ||| ||||||| ||| ||||| | || ||| | | | | | Sbjct 37757 AGCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCACCAGTTCG 37698 Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 || ||| | ||| |||||||| || || | | || |||| | ||| | || Sbjct 37697 TTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTC 37638 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || | ||||| || || ||||| |||| |||| || | |||||| || || | || Sbjct 37637 ACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCTCA 37578 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | |||||||| || || | || || || || || || || ||||| || |||| | Sbjct 37577 ATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATAGA 37518 Query 75836 AAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAATCCCAAA 75893 | ||| || | | || ||||| || ||||| |||| || | ||| ||||||| Sbjct 37517 AGACTGTTCCGTACGCC--GTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAA 37460 Query 75894 GATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATC 75953 || | || ||| |||| | ||| || || | || || || || || | Sbjct 37459 GAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCGAGC 37400 Query 75954 CATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCAC 76013 || |||||| ||||| || || || ||||||||||| || || || |||||||||| Sbjct 37399 CAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCAC 37340 Query 76014 CGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAG 76073 |||| ||||||||||| || ||||| || ||||| || ||||| | ||||| |||| Sbjct 37339 CGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAG 37280 Query 76074 GATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 | | | | | ||||| |||||||| || || || || ||||||||||| || | || Sbjct 37279 GTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACGAT 37220 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | || ||| | |||||||| || | |||||||| ||| ||| |||||||| | Sbjct 37219 GACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGT 37160 Query 76194 TGAGATTTC-TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCA 76252 | || |||| || | || | ||| ||| || |||| ||| | || || | | || Sbjct 37159 TAAGGTTTCGTGTC-ACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCC 37101 Query 76253 TCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 || | |||||| ||| || |||| ||| || |||||||| || || | |||| | | Sbjct 37100 TCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCGGGA 37041 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 | || | || | || || |||| |||| |||||| || ||||||| |||||| Sbjct 37040 GACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGT 36981 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 || |||||||| |||||||| ||||| || || | | |||| || |||||||||||| Sbjct 36980 TGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATC 36921 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTA-TTATAGATTTGTATCGCT 76490 || || | ||||| | ||| | | ||| ||| | | | | | || || Sbjct 36920 TGGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGGCACCTGTCG-TAAATAGCGGC 36863 Query 76491 TCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAAC 76550 || |||| |||| | || ||| ||||| || |||||||| || |||| Sbjct 36862 CTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTTAAAC 36803 Query 76551 CAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAA 76610 ||||||| || |||||||| | |||||| ||| || || | ||||| Sbjct 36802 CAGGACACGAGTTGGGACACATAAGTGACCAACTGTCATTATCGGCGACTCTACGCATAA 36743 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTG 76670 | |||||||| ||||| || ||| || ||||| || | | | ||||||| | || | Sbjct 36742 ACAGATCAGGAATCCAAAGTGCATAGAAGAGATCACGCGCACGATGTTCTTCGATGCCGG 36683 Query 76671 TATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 76730 |||| ||| || || ||||| || | ||| || |||||||| || ||||| || | Sbjct 36682 TATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGATAAATAG 36623 Query 76731 CCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 | | |||| || | |||||| || ||||| || | ||| | |||||| ||||| || | Sbjct 36622 CAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTATTGTATA 36563 Query 76791 CTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 | | | ||| || | || || || || || |||||||| |||| |||||| Sbjct 36562 CGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATAA 36510 Score = 87.8 bits (96), Expect = 3e-12 Identities = 315/482 (65%), Gaps = 22/482 (5%) Strand=Plus/Minus Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 ||||| |||||| | | ||||| || |||||| | || || || || ||| Sbjct 36141 AACCACTTTTCACTCATCAAGTTGTAAGTGTCAATAGCCGCATCAATGTCGGTGCCGTGA 36082 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 || || || || || ||||||| ||||||||| || ||||| || || | || ||| Sbjct 36081 ATACCAACTGCTACTCGCATCAGCATATGCTGTGGCCGTTCCACTACTTTTTCGTTGATT 36022 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 |||| |||||| ||| ||| | ||| || || |||||||| || ||||| | Sbjct 36021 TTCAGCAAGTAGGATCGTTCTAGAGTACGGAATCCGAAATAGTTATAGTTGAAGTCACGA 35962 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATC--CATGACAG 77267 | ||| | ||| | | || || ||||| | || | ||| | ||| || Sbjct 35961 TTGTACACGATAGCGGCATCAAGCCGATCCTTGT------TAGCCATAACGACATTGTAG 35908 Query 77268 TGGTA----GAAATAATTGGAGATCGTATTC-CATTTTTAGGATTA-ACAT--AGTTAAA 77319 || ||||| || || |||| | | |||| ||| | | |||| || || Sbjct 35907 GTGTCCTCCGAAATCATCGGC-ATCGGACTGGCATTCTTACTCTGAGACATGAAGCGCAA 35849 Query 77320 TAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGC 77379 | | ||| | || ||| |||| | |||| || |||||||| ||||| || | ||| Sbjct 35848 CATG-CTTAC--TATCTCGGAAAATTGCTTTTGGGTCTCCTTGTGAAGATTTGAAATGGC 35792 Query 77380 TATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTC 77439 || | ||| ||||| | |||||||||||||||| || || || || ||| |||| Sbjct 35791 GATACGAGCGGCTAGGACCGCATAGTCAGGATGTTTAGTTGTCATTGTAGCCGCTGTTTC 35732 Query 77440 TGCCGCTAAAGT-ATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTT 77498 || || || || ||||| ||| |||| || |||||| || || ||||| || || | Sbjct 35731 AGCGGC-AAGGTCATCTAGTTCCTTAGTTGTTACTCCGGCGTAAAGACCTTGGATTACCT 35673 Query 77499 TC 77500 || Sbjct 35672 TC 35671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712633506036480