Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5480 127 5e-24 >seq5480 Length=41483 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || |||||||| || || || |||||||| || || | | || | ||| || Sbjct 1491 GAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTC 1432 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | || ||||| ||||| |||||||| || || | | ||| || ||||| || Sbjct 1431 CTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTC 1372 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || |||||| ||| ||| |||| | |||| || ||| || || || ||||| || Sbjct 1371 CTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGT 1312 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| ||||||||||||| |||||| Sbjct 1311 TTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| || || ||||| || || ||||||||||| | || || | Sbjct 2569 GAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCG 2510 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||| || |||||||| || | ||| ||||| | || || || || Sbjct 2509 ACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTC 2450 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| |||||||| || || ||| | || | | |||| ||| || || || || Sbjct 2449 CTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGT 2390 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| |||||||| ||||| || || ||||||| |||||| Sbjct 2389 AATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| ||||| |||||||| || | | || | |||||| Sbjct 2790 AGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCT 2731 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| | |||||||||||| | || ||| || ||||| ||| Sbjct 2730 TCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCT 2671 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | ||||||| ||| || || || || || || Sbjct 2670 TGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTC 2611 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| || | ||||| Sbjct 2610 TTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153321655679644