Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq29777 168 1e-36 seq5480 163 6e-35 seq19961 104 5e-17 seq27404 93.3 9e-14 seq25055 93.3 9e-14 seq24182 93.3 9e-14 seq11963 93.3 9e-14 seq10923 93.3 9e-14 seq7979 93.3 9e-14 seq25540 89.7 1e-12 >seq29777 Length=19435 Score = 168 bits (186), Expect = 1e-36 Identities = 355/522 (68%), Gaps = 8/522 (2%) Strand=Plus/Minus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||||||| | || || || || ||| || || || || || || ||| |||||| Sbjct 14614 GGGTTGTAGTTTGGCACCTTGGTGCTCCAGCCCGTACCGATGCCCTCAGCACCGTTCACC 14555 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 || | |||| || || || | |||||| || ||||| ||||| | |||||| || Sbjct 14554 AGCACCATCGGTATGATCGGCAGATAATAATCCGGCTCGATTTTCTGGTTGTCGTCGAAA 14495 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGA-GGATTCAG 273775 ||||| || | || | || || | || || | |||| | || | || ||| Sbjct 14494 AGGTAGTTGAGCACCGGGTCGTCGGAGGCAGGAAATAGACTTCGTG-CTAACGGGCTCAA 14436 Query 273776 TTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAA 273835 || |||||||||||||||| |||| |||||||||||| ||||||| || || || Sbjct 14435 CTTTGTGAAAATGTACCTGGGTGACGCAGAGTCCTTGCCACCCTGCAGCCGCGTGCCGAA 14376 Query 273836 CTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 |||||| |||| ||||| ||| ||||||||||| || ||| | | ||| |||| || Sbjct 14375 CTGACCAATGGGCTGTAGCAGGTTGATGTTGTTGCTGCCCACGAAGTTCTGCGCCAGGTT 14316 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| ||| | || || ||| |||||||| ||||| |||||||| | Sbjct 14315 GACGATTGTCATCATGAGCGACTGCTCACCGTGGTGGTAGGCTGACATTTCGGCGACGGA 14256 Query 273956 ACCACTGAACTGAGCAACCTTCACAT--CGCTCGTCAAGTTTCGCTTGAATGCGGAATAC 274013 ||| ||||| || |||||||| | |||| ||| ||||| |||||| | || Sbjct 14255 ACCGGCCAACTGCGCCACCTTCACTTCCCGCTTGTC--GTTTCTCTTGAAACATGTGAAC 14198 Query 274014 AACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAA 274073 | ||||| ||||| ||||||| || |||| | |||||||| ||||| Sbjct 14197 AGTACCTTACGCTGTCCAGGCTTGAGACCGTCAATCAATGATGGAATGGATCGTTCGTTG 14138 Query 274074 T-CATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAAGTC 274114 | ||| | ||||||| |||||| || |||| | |||||| Sbjct 14137 TCCATGTTG-GAGAACAGAATCAGCTCTTTGTGCACGAAGTC 14097 >seq5480 Length=41483 Score = 163 bits (180), Expect = 6e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934 |||||||| || ||||||||||| | |||||||||||| |||||||||||||| || Sbjct 2107 ACCACGCAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAG 2048 Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 ||||| ||||| || || ||||| || || || || | ||| || || || ||||| Sbjct 2047 TGTGCGACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAAT 1988 Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||||||||| || | || ||| | || || ||||| | | ||| || || Sbjct 1987 ACCCTCCTTGTCTTGGATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTC 1928 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| || || | ||||| |||||||| ||||| Sbjct 1927 CAATGTGATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || || || || | ||| ||| || |||||||| || || | Sbjct 1277 CCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAG 1218 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| || ||||||||||| |||||||| ||||| | || || || ||| Sbjct 1217 AGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGG 1158 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| ||||| |||| |||||| | ||||| || ||||| ||||||| Sbjct 1157 ATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACG 1098 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || |||||||| || ||||| || || ||||| || |||||||| Sbjct 1097 TCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCATTTT 1048 Score = 147 bits (162), Expect = 5e-30 Identities = 175/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 282865 AACGTGAAC-CACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTG 282923 |||| ||| ||||||| || || |||||||| || | |||||||| || || || || Sbjct 1742 AACGAAAACTCACCACGAAGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTA 1683 Query 282924 TAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGG 282983 ||||| || ||||| || ||||| ||||| || || || || || | ||| ||||| Sbjct 1682 TAGTCGCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGA 1623 Query 282984 TCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAA 283043 || || || ||||| |||||||||||||||| ||| ||| | || || ||||| Sbjct 1622 TCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTG 1563 Query 283044 GCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||||||||| || || || || || | ||||| ||||| |||||||| Sbjct 1562 GGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || || || || | ||| ||| || |||||||| ||||| | Sbjct 1505 CCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAG 1446 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| | ||| || ||||||||||||| | ||||| ||| || Sbjct 1445 AGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGG 1386 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| ||||| |||| ||| || | ||||| ||||| || | ||||| Sbjct 1385 ATGCCCTCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACG 1326 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || ||||| || || || | ||||| ||||| |||||||| Sbjct 1325 TCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 140 bits (154), Expect = 7e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934 ||| |||| ||||| || || || | || || ||||| ||||||||||| | ||| Sbjct 2803 ACCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAG 2744 Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 ||||||||||| || || || || || || |||||||| | || ||||| ||| || Sbjct 2743 GGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGAT 2684 Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||| ||||| ||||| || || ||| | ||||| ||||| || | || || || Sbjct 2683 GCCCTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTC 2624 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| || |||| || || || || || ||||| Sbjct 2623 CAGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || ||||| || ||||| |||||||| | || || || || |||||||| |||| | Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| || ||||| || || ||||| | ||| ||||||||| ||| Sbjct 2517 AAG-GTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGG 2459 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| | || || | || || ||||| | || || Sbjct 2458 AATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAAC 2399 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || || || || || | || || ||||| |||||||| Sbjct 2398 CTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 >seq19961 Length=25414 Score = 104 bits (114), Expect = 5e-17 Identities = 157/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCT--TGCCGTCTTATCGGCATGAA-TGCTGAT 230243 ||| |||||||| | ||| ||| | ||| |||| | | ||||||||| ||| ||| Sbjct 14649 GAACAGGAGTTCCTCACCGAGGCTCTGCCTGTTGCCATGCT--CGGCATGAACTGC-GAT 14705 Query 230244 CTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCG--CTAGGGTACG 230301 |||||| ||| || ||||| || || || |||| | | | | ||| |||| | | Sbjct 14706 CTCATGAAGCAGTACATCGAGTTTGTGGCCGATC--ACCTGCTTAGCGATCTAGACTGTG 14763 Query 230302 AGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGA 230361 | ||| | | |||||| |||| ||||||| ||| ||||||| || || | | || | Sbjct 14764 ACAAATTATGGAACTCCGAGAATCCCTTCGATTTCATGGAGCAAATCTCCATGGAAGGCA 14823 Query 230362 AAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCA 230398 |||||||||||||||| ||||||||| | || ||||| Sbjct 14824 AAACTAACTTCTTCGAGAAGCGTGTCGGGGAGTATCA 14860 >seq27404 Length=75800 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 69503 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 69445 >seq25055 Length=46323 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 3219 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 3161 >seq24182 Length=11470 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 7246 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 7304 >seq11963 Length=27246 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 17712 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 17770 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 17867 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 17925 >seq10923 Length=28924 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 20578 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 20520 >seq7979 Length=12407 Score = 93.3 bits (102), Expect = 9e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 9588 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 9646 >seq25540 Length=47658 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 29996 TTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 30054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046286379313656