Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5480 134 1e-26 >seq5480 Length=41483 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || |||||||| || || ||||||||||| ||| ||| ||| | || ||| Sbjct 2091 ACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTCC 2032 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || || || | |||||||||||| | || | ||| ||||| || Sbjct 2031 AGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTGG 1972 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | || | || |||||||| | ||||||||||| || || ||||| Sbjct 1971 ATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTTG 1912 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| ||||| |||||||| Sbjct 1911 CCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||| |||||||| || || | ||| |||| |||| ||| Sbjct 1487 ACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCC 1428 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||||||||||| | ||| ||||| | ||| | || ||||| ||| Sbjct 1427 AATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGG 1368 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || || || | ||| | || ||||| | || || || || | |||||||| || Sbjct 1367 ATTTT-TGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTT 1309 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||||||||||||| ||||| Sbjct 1308 GCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || ||||||||| |||||||| || | || ||| | || || Sbjct 2788 CACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTC 2729 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || |||||||| | |||||| || | || | || ||||| || Sbjct 2728 GAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTG 2669 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | || ||||| | | |||||||||| || |||||||| Sbjct 2668 AATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTT 2609 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || || ||||| || |||||||| Sbjct 2608 TCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | |||| | |||||| || || || |||||| || |||||||| Sbjct 2584 TTGCATCCCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTA 2525 Query 44164 ATC-GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||| | | || | ||| | || || ||||| || || || ||||| | |||||| || | Sbjct 2524 ATCAGACAAGGT-GCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGT 2466 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 | | || | || ||||| || |||||| ||| | || | ||||||||| | Sbjct 2465 CAGGCGGAATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTG 2406 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | |||||| || || || ||||| || || |||||||| ||||| Sbjct 2405 GCTCAACCTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| ||||| |||||||| ||||| | ||| || |||| || Sbjct 1259 ACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCTTCT 1200 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || |||||||| ||||| | ||||||||| | || | || || || ||| Sbjct 1199 AGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGG 1140 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||| | || | || || || | | ||| || || | ||||||||||| Sbjct 1139 ATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACGTCGAGGGTAATCGTCTTC 1080 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || |||||||||||||| Sbjct 1079 CCAGTCAACGTTTTGACGAAGATTTGCAT 1051 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||||| ||||| || || || || ||| ||| ||| |||| ||| Sbjct 1715 ACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCC 1656 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || || | |||||| ||||| | || | || || || || Sbjct 1655 AGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGG 1596 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| |||| || | || ||||| || || || || | ||||| || || Sbjct 1595 ATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTG 1536 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||||||||| || ||||| Sbjct 1535 CCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359842264400388