Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5480 156 1e-32 >seq5480 Length=41483 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || || ||||| |||||||| || |||||||| |||||| Sbjct 2582 CAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCAGAC 2641 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| || || || || ||||| || |||||||| Sbjct 2642 ACAATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCAGCAG 2701 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| || || |||||||||||||| | || ||| | || || ||| | Sbjct 2702 AGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAACATT 2761 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || ||||| ||||| Sbjct 2762 CAAAAGGAGTCGACCCTGCACCTTGT 2787 Score = 147 bits (162), Expect = 5e-30 Identities = 164/216 (76%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| ||||| | || || || ||||| |||||||| || ||| Sbjct 1048 AAAATGC---AAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAA 1104 Query 177975 AGCTCAGACACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 |||| || || ||||| ||||| || |||||| || ||||||||||| || ||||| || Sbjct 1105 GGCTCGGATACGATCGAAAACGTAAAGACAAAA-ATCCAGGACAAAGAGGGCATCCCGCC 1163 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 ||| ||||| | | || || ||||| ||||| || ||||| || |||| || | || Sbjct 1164 GGATCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGA 1223 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| |||| || ||||| || || || || || Sbjct 1224 TTATAACATCCAGAAGGAATCCACCCTTCACCTCGT 1259 Score = 129 bits (142), Expect = 1e-24 Identities = 157/210 (75%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || ||||| ||||| ||||| || ||||| || || |||||||| || |||| Sbjct 2354 CAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC--- 2410 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| || || || || |||||||| ||||| || || || || || ||||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 || || || |||||||| || ||||||||||| ||||| | || |||| | ||||| || Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCAC-CTTGTCTGATTACAA 2529 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || || || ||||| || ||||| || Sbjct 2530 CATTCAGAAGGAGTCAACCCTCCATCTGGT 2559 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| | ||||||||| | ||| Sbjct 1886 CAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCCGAC 1945 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || |||||||| || ||| || || ||||| || || || || || || ||||| Sbjct 1946 ACGATTGAAAACGTCAAGACTAAA-ATCCAAGACAAGGAGGGTATTCCCCCCGATCAGCA 2004 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || ||||| ||||| ||||||||||| |||||||| | || || ||| || ||| | Sbjct 2005 GCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACAACAT 2064 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||||| || || ||||| || Sbjct 2065 CCAGAAAGAAAGCACGCTCCATCTGGT 2091 Score = 123 bits (136), Expect = 6e-23 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||| |||| ||||| | ||| || ||||| ||||| ||||| || ||| Sbjct 3000 CAAATTTTTGTGGAAACACTCACCGCAAAGACCATCACGCTCGAAGTGGAGTTGTCTGAC 3059 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||| || |||||||| || || || || | || || ||||| Sbjct 3060 ACCATCGA--ACGTCAAGGCTAAAATTCAGGATAAGGAGGGCATTTCCCCTGATCAGCAG 3117 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 || || ||||||||||||||||||||||| || ||| | ||| Sbjct 3118 CGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGATGCACT 3159 Score = 109 bits (120), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || ||||| || ||||| || || ||||| || | ||| || | Sbjct 1510 CAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCG--AGCCCAGTG 1567 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || ||||| ||| |||||| || |||||||| || ||||| || || || | Sbjct 1568 ACACGATTGAAAACGTGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCAAC 1627 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || ||||| ||||| || || || || || | || || ||| ||||| Sbjct 1628 AGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAATA 1687 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| ||||| || || || Sbjct 1688 TTCAGAAGGAAAGCACACTCCACCTGGT 1715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203210464378216