Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5480 134 1e-26 >seq5480 Length=41483 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || ||| |||||||| ||||||||||| ||| Sbjct 1505 CCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAG 1446 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| |||| || | ||||||||||| || ||||| | |||||| || | || Sbjct 1445 AGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGG 1386 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||||||| |||| | | ||||| | ||| || Sbjct 1385 ATGCCCTCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACG 1326 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || |||||||| || || || ||||| ||||| |||||||| Sbjct 1325 TCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||||||| || || ||||||||||||||| || || || Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || |||||||| || || ||||| || || ||||||||||| | ||| Sbjct 2517 AAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGA 2458 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| | ||| | || | | ||| | | |||||||| | ||| || Sbjct 2457 ATGCCCTCCTTGT-CTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAAC 2399 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || ||||| || || ||||| || ||||| |||||||| Sbjct 2398 CTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 132 bits (146), Expect = 4e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 ||||| | ||| | ||| || ||||| || |||||| |||||||| ||||| || ||| Sbjct 2802 CCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGG 2743 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| | || |||||||||||||| ||||| |||| | ||| ||||| | || | | Sbjct 2742 GTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATG 2683 Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTC 41817 | |||||| | | ||| | || || | |||| | | ||||| || ||||||||| Sbjct 2682 CCCTCCTTAT-CTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTC 2624 Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || |||||||| || || ||||| ||||| Sbjct 2623 CAGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 129 bits (142), Expect = 5e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 41639 CCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGG 41698 || || ||||| | ||||| || || ||||| ||||||||||| ||||||||| |||| Sbjct 1730 CCACGAAGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGG 1671 Query 41699 GTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACG 41758 ||||| |||| || || ||||| || ||||| || || |||||||| || | || | | Sbjct 1670 GTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATG 1611 Query 41759 CTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTC 41817 | ||| |||| | || | |||| || ||| | | ||||| || | ||| || || Sbjct 1610 CCCTCTTTGT-CTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTC 1552 Query 41818 CACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || ||||| || || || ||||| |||||||||||||| Sbjct 1551 GAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462108884596800