Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq66944 201 1e-46 seq66660 86.0 7e-12 >seq66944 Length=5658 Score = 201 bits (222), Expect = 1e-46 Identities = 320/458 (70%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 141661 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 141720 ||||| | ||||| |||||||||||| ||||| ||||||| ||||| ||||||||||| Sbjct 1511 CATCAGTTTATTCAATTGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCC 1570 Query 141721 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 141780 |||||| ||||| || || | | |||| |||||||| ||||| || ||||| | Sbjct 1571 ACGGTTATTCTTCAAGACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGATAGAATAG 1630 Query 141781 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 141840 || ||||| || || || | ||||| || ||||| ||||||||||| |||||||| || Sbjct 1631 TGTTGCAGCACCACCGCGTACACCACCTTGAGAACAAGATTTAACTGCGGTCTGAAAGTG 1690 Query 141841 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 141900 ||| |||| || ||| ||| ||||| |||| || | || | |||| | | Sbjct 1691 TTTATAAAATGGGATACAACCCGTATGAAAAGCTTCGCC---GTCACGTATCGAACTTCC 1747 Query 141901 ---GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAAC 141957 ||||||||| ||| | ||||| ||||| ||||| |||| || | ||||| || Sbjct 1748 CAAGGCACGAATTCGACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTTCAC 1807 Query 141958 AATTGAAGCAGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACA 142017 ||||| | |||| ||| || || | | ||| || | |||||| | || || Sbjct 1808 AATTGCACTTGAAGTTGCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTACGCA 1867 Query 142018 TGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 142077 ||||| ||||| ||| | || || || ||| | ||| || || || ||||| ||||| Sbjct 1868 GGAACTGAACTGGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTGGGCAAAGAAAT 1927 Query 142078 CTGTCGAGTTGATACTGCTTCATAAAAACGGATAACAT 142115 | |||||| | || || || || || | |||| Sbjct 1928 TTTAAAAGTTGAAATAGCATCGTAGAAGCGCTTTACAT 1965 >seq66660 Length=2041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 72255 GCTCTACCAAACTGAGCTACA-CGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGAA 72313 |||||||| | || ||||| | | | || |||| ||||||||| | | |||||||| Sbjct 1055 GCTCTACCGA-CTAAGCTATATCAGCGTGGTTTAATTTGGAGCGGGCAGCGGGAATCGAA 997 Query 72314 CTCACATCATCAGATTGGAAGTCTGAGGTAAT-ACCATTATACGATATCCGCA 72365 | | | ||||||| ||||||| |||||||||| ||||||||||||| ||||| Sbjct 996 CCCGCGTCATCAGCTTGGAAGGCTGAGGTAATAACCATTATACGATGCCCGCA 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539909371376960