Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq44371 104 3e-17 seq6544 93.3 5e-14 seq19264 82.4 9e-11 >seq44371 Length=3624 Score = 104 bits (114), Expect = 3e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | |||||| || | |||||| || ||||||||||| || |||||||| Sbjct 1094 TCCTCCTCTGAGACGCAATACTAGATGCAACGTAGATTCCTTTTGAATGTTATAATCAGC 1153 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || | || || |||||||| || | || |||||||| | || Sbjct 1154 CAAGGTTCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATTAAGCGTTGCTGGTCAGGTGG 1213 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCA 43134 | | ||||||| | ||| | || | || | | | | | || || | ||| | Sbjct 1214 AATTCCTTCCTTGT-CTTGAATCTTAGCTTTAACATGTTCAATAGTATCCGAAGGTTCAA 1272 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 | || | ||||||||||| ||||| || || || ||||| |||||||||| Sbjct 1273 CCTCAAGTGTGATGGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCATTT 1323 >seq6544 Length=2973 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1363 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1422 Query 60126 TACTACCGAGGA--TTGAATATA 60146 ||||| |||||| |||||| || Sbjct 1423 TACTATCGAGGACGTTGAATTTA 1445 >seq19264 Length=1010 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 716 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571339045850560