Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq44017 215 5e-51 seq44371 122 8e-23 seq25273 107 2e-18 >seq44017 Length=1387 Score = 215 bits (238), Expect = 5e-51 Identities = 308/432 (71%), Gaps = 4/432 (1%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || |||||||| ||||| || ||||| ||||||||||| || | |||||||||||| Sbjct 440 TTATCAACTGTAAATTGTATAGCATTTGCAGCCGGTTTGGTACGTAAATAATACATGCCA 381 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || || |||||| |||||| | ||||||||||| || || | || ||||| | || Sbjct 380 GTTTTGAGACCCGCCTTCCAACCATAAAAATGTATAGATGTTAGCTTGCCATAGTTTGGT 321 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || | ||||| | ||| ||||| ||||| ||||| |||||||| || ||||| |||| Sbjct 320 TCAGCTACATGT--ATATTAAACGATTGACTTTGATCAATAAACGCGCCACGATCAGCGG 263 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| || || || || ||| |||||||| || |||||||| |||| | || | Sbjct 262 CCATCTTCATTGTAGTCTTCACCGATATTTCCCACACAGTCTTGTAAAGTTCACGTATTT 203 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | ||||| ||||| || | || | || || | || ||| || | |||| | Sbjct 202 TTTGTGGTATAGATTCAATACCTTGTATTGAACCACGACTGGTTATAATTTTAGTTTTCA 143 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | || | ||||||||| | |||| | ||| | || |||| | || || |||| Sbjct 142 TTTCTTCATCCCACAAACCCAATTCGGTAAGATCGCGCAACAAATGATGATTAACAACTT 83 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 |||| ||||| || | ||||| || | |||||||| || || | ||||| ||||||| Sbjct 82 GAAATTCGCCCGAAAGTACGCGACGATTATAAATGTTAGAAGTATAAGGTTCAAAAGATT 23 Query 22524 CATTGTTTCCCA 22535 |||| || |||| Sbjct 22 CATTATTGCCCA 11 >seq44371 Length=3624 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| ||||| | || |||||||| || Sbjct 1321 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTCG 1262 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | ||| || ||| | || ||||||||||| | || || |||||| Sbjct 1261 GATACTATTGAACATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATTCCACCTGACCAG 1202 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || |||| |||||||||||||| ||||||||| || || ||||||||| Sbjct 1201 CAACGCTTAATTTTCGCTGGCAAACAATTGGAAGACGGACGAACCTTGGCTGATTATAAC 1142 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 |||||||| ||||| || | ||||| ||| Sbjct 1141 ATTCAAAAGGAATCTACGTTGCATCTAGTA 1112 >seq25273 Length=2210 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| |||||||| |||||| | || || || || | Sbjct 2193 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCATGT 2134 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || || | ||| || || |||||| | || || || || Sbjct 2133 GACACTATCGAGAACGTAAAGGCTAAAATCCAAGATAAAGAAGGCATTCCCCCAGATCAA 2074 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA-CTCTATGACTATGAGCGATTATAA 31371 || ||| |||| ||||||||||| || |||||||| | || || || ||| || || Sbjct 2073 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGCCGTGCCT-TGTCCGACTACAA 2015 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| || || || ||||| |||| || Sbjct 2014 CATCCAAAAGGAGTCTACCCTTCACTTGGTCCT 1982 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||||||||| || ||||| | || ||||| || ||| Sbjct 1965 ATGCAAATTTTTGTCAAGACATTGACAGGCAAGACTATCACTTTAGAAGTTGAGCCATCC 1906 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || || | || || ||||| || | || || || ||| Sbjct 1905 GATACTATTGAAAATGTAAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCAGATCAG 1846 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| |||| || |||||||| ||| |||| ||| ||| | ||| |||||| Sbjct 1845 CAACGTTTAATCTTTGCTGGCAAGCAGCTGGAGGACGGACGTACTCTAGCCGACTATAAC 1786 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || |||||||| || ||| |||| ||| Sbjct 1785 ATACAGAAGGAATCGACACTCCATTTGGTGCTT 1753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445393338099840