Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq65837 179 9e-41 seq65974 178 3e-40 >seq65837 Length=1221 Score = 179 bits (198), Expect = 9e-41 Identities = 478/723 (66%), Gaps = 12/723 (2%) Strand=Plus/Plus Query 16356 GACGAATATACGCAGTTACTTTATCACCTTCTG-CCGGAAGGGCCTGCCTGGGACGGAGA 16414 |||||||||||||| ||| || || || | ||| || || || ||||| | ||| Sbjct 220 GACGAATATACGCAATTA-TTGCGAACATTATTACCGCCCGGCCCCGCATGGGATGAAGA 278 Query 16415 AAACCCACTGATTGAAGGGCTGGCGCCGTCGCTGAACCGGGTACATCAGAGAGCGGATGA 16474 | | || || ||| ||||||| || || || ||| | || ||||| || ||| Sbjct 279 AGATCCGCTCATTAAAGGGCTAGCCCCTTCACTGGCACAGGCTCATCAACACGCCGATAG 338 Query 16475 ACTGATGGCTGAAATTGATCCGGCCAGAACCACAGAACTGATAGACCGTTATGAACAGCT 16534 |||||| ||||||| |||||||| | | ||| | || ||||||| ||| | | Sbjct 339 CCTGATGATTGAAATTAATCCGGCCCAATCGGTTGAATTAATTAACCGTTACGAAAAATT 398 Query 16535 GTATGGCCTGCCTGATTCCTG---TGC-ACCGGAAGGCGTTCAGACATTACAGCAGCGCC 16590 | |||| | || ||| || ||| | ||| || | || || | | | | Sbjct 399 ATGTGGCTTACCAGATAAATGCCTTGCCAATAGAATGC----AAACGCTAGAAGAAAGAC 454 Query 16591 AGCAACGGCTGGATGCAAAGGCAAATGTTGCTGGCGGTATAAACGAGAGGTTTTATCGGG 16650 ||||| ||| ||||| || | ||| | || || || || | | |||| | Sbjct 455 AGCAAGTGCTTGATGCTAAAGTGAATACAGTAGGTGGCATTAATGCGGCTTTTTTTAAAA 514 Query 16651 AACAGCTTGATGCGTTGGGGTATACCGCTGCCACCATTGAGCAGTTTCAGAATCTCGACA 16710 | ||| | | || || ||| || || || || || || ||||| |||| || | Sbjct 515 AGCAGTTGGGAATATTAGGTTATCCCAAAGCAACAATAGAACAATTTCAACATCTTGATA 574 Query 16711 GCACACCCGATCCTGAATGGGGGGAATTCTGGCGTTACTACTGGCGTGTGAATATTCCGG 16770 | || || |||| | |||||||| ||||||||||||||||| || |||||||| | Sbjct 575 GTACGCCAAATCCGGCGTGGGGGGATAGGTGGCGTTACTACTGGCGAGTCAATATTCCCG 634 Query 16771 CTGATGCGAACATCAGCTGGCAGACCTGTACAAGCACCTGCGACTCTGCGATCAGAACGT 16830 || || || || ||||| | ||||| || | ||| | | || || | | Sbjct 635 TCGAGGCAAATATACGCTGGATTAGTTGTACCAGTTCTTGCAATGAGTCAATTAGGAGAT 694 Query 16831 GGGGCGATACTGTTGCTGAATGTGTGATTGATAAGCTTTGTCCGTCACATACGGTTGTTG 16890 ||||||||| || | ||||| |||||| | | ||||| |||||||| || Sbjct 695 GGGGCGATAGTGCAGTGGAATGCGTGATTAAACGCCAATGTCCTTCACATACCCAAGTAC 754 Query 16891 TTTTTGCTTATCCGGAAGGAAAAGAGAATGCACAGAATTGATACGCCCACCGCGCAAAAA 16950 ||||||| || | ||||| || | ||||| | |||||||| || |||||||||||| Sbjct 755 TTTTTGCCTACACCAAAGGAGAAAATGATGCATCGCATTGATACCCCAACCGCGCAAAAA 814 Query 16951 GATAAATTTGGTCAGGGAAAAAACGGATTTACGAATGGTGATCCCGCCAC-GGGCCGCCG 17009 || |||||||||||||| |||||||||||||| ||||| || | |||| || |||| Sbjct 815 GACAAATTTGGTCAGGGGAAAAACGGATTTACCAATGGCGACTCAACCACAGGAACGCC- 873 Query 17010 CGCAACGGATCTCAACAGTGATATGTGGGATGCAGTCCAGGAAGAGGTCTGTACTGTTAT 17069 |||| | | | | |||| ||||| | ||||||||||| ||||| ||| | Sbjct 874 ATCAACTAGTTTGGATGAGGCCATGTTCGATGCGTTTCAGGAAGAGGTTTGTACCGTTGT 933 Query 17070 TGA 17072 ||| Sbjct 934 TGA 936 >seq65974 Length=1275 Score = 178 bits (196), Expect = 3e-40 Identities = 323/473 (68%), Gaps = 0/473 (0%) Strand=Plus/Minus Query 10497 AAAATTTCTGATATCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCC 10556 ||||| ||||| || ||||| || ||||| || || || | || || || | || ||| Sbjct 1260 AAAATCTCTGAAATTGTGACCCGTATTGGCCCACTGGGTGCAGTGGCGGGTCTTGCCTCC 1201 Query 10557 GGCGAAATTGCCGCGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCGGAGATAGCC 10616 || || |||||||| ||||||| || |||||||| ||||| || || || || | ||| Sbjct 1200 GGTGAGATTGCCGCACTGGGCGCAACAATTGCCGGTATGGGCGTCGAGTCAGATGTGGCC 1141 Query 10617 TCCACCGGCATCAAAAACTTCATGCTGTCGTTAACCGCAGGTAATTCGGCAACCAAAGCC 10676 || || || ||||||||||| |||||| |||||||| ||| || || || || ||| | Sbjct 1140 TCAACTGGTATCAAAAACTTTATGCTGGCGTTAACCAAAGGGAAATCAGCGACAAAATCA 1081 Query 10677 CAGAAACAGGCTATGGCTTTCCTGAAGCTGAATCCCCGGAAACTCGCTGAGGATATGCAA 10736 || ||| || | | | || | | |||| ||||| || | | |||||| Sbjct 1080 CAAAAAATTGCGTTACGCACCTTAAAAATCAGTCCCAAAAAACTGGCCGCACAGATGCAA 1021 Query 10737 AAGGATTCGCACGGGGCCATGCTGAAGGTGCTGGACTCGCTCGCGAAAGTGCCAAAAGCT 10796 || || || | || ||||| ||| ||||||| | | | | |||||| || ||| Sbjct 1020 AAAGACGCGAAAGGTGCCATATTGATGGTGCTGAAAGCCTTTGAGAAAGTCCCTAAAAAA 961 Query 10797 AAACAGGCCGCCGTCATGAATGCGCTGTTTGGCAAGGAGTCACTTAGCGCGATTGCCCCG 10856 | || ||| | | | |||| |||||||| || || ||| | || ||||| ||| Sbjct 960 GATCATGCCACATTATTAAATGATTTGTTTGGCTCTGAATCCCTTGGGGCAATTGCACCG 901 Query 10857 CTGCTGACCAACCTGGATTTGTTACGCACCAATTTTGATCGTGTGGCTGATGCCCAGGAA 10916 ||||| |||||||| | || || ||| | ||||| || || ||| || | Sbjct 900 CTGCTCACCAACCTTAAATTACTAGAAGTTAATCTGGATCGCGTCGCCGATAAACAAAAG 841 Query 10917 TATGGCGGCTCGATGCAGAAGGAATACGCATCCCGCGCGGCCACAACAGaaaa 10969 || |||||||| ||||| |||||||| || | || || || || || | ||| Sbjct 840 TACGGCGGCTCTATGCAAAAGGAATATGCTACTCGGGCAGCTACTACCGCAAA 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128253150556464