Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq66944 138 2e-27 >seq66944 Length=5658 Score = 138 bits (152), Expect = 2e-27 Identities = 276/408 (68%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 43621 CAGCTTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTT 43680 ||| || || | ||| | ||| ||||| | || |||| || || ||||| ||||| Sbjct 1514 CAGTTTATTCAATTGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCCACG 1573 Query 43681 GTTGTTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGT 43740 ||| || |||| || || | |||| ||||| | ||||| ||||||||| | || || Sbjct 1574 GTTATTCTTCAAGACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGATAGAATAGTGT 1633 Query 43741 AGCAGCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTT 43800 ||||| ||||||||||||||||| || || ||| ||| || || ||||| || | ||| Sbjct 1634 TGCAGCACCACCGCGTACACCACCTTGAGAACAAGATTTAACTGCGGTCTGAAAGTGTTT 1693 Query 43801 CCAGAACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTC--- 43857 | || || ||| ||| || || | |||| || || || |||| | | Sbjct 1694 ATAAAATGGGATACAACCCGTATGAAAAGCTTCGCCGTCACGTAT---CGAACTTCCCAA 1750 Query 43858 GGCACGAATAGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGAT 43917 ||||||||| || | || || || |||||||| |||| | || ||| | || || Sbjct 1751 GGCACGAATTCGACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTTCACAAT 1810 Query 43918 TGAACTTGCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGA 43977 || ||||| || || ||||| |||||| || ||| || || ||||| || Sbjct 1811 TGCACTTGAAGTTGCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTACGCAGGA 1870 Query 43978 GCTAAACTGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGG 44025 || ||||||||| | || || || ||||| | | ||||| || || Sbjct 1871 ACTGAACTGGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTGGG 1918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745596287812480