Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25273 125 6e-24 seq44371 123 2e-23 >seq25273 Length=2210 Score = 125 bits (138), Expect = 6e-24 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | ||| || | |||||||| | ||||| |||||||| | Sbjct 1954 AAAAATTTGCATACCACCACGCAAGCGGAGGACCAAGTGAAGGGTAGACTCCTTTTGGAT 2013 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| || | | ||| |||| || || || | || ||||| | ||| Sbjct 2014 GTTGTAGTCGGACAAGGCACGGCCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTG 2073 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||| ||||| |||||||| || | ||||| ||||| ||| ||| |||||| Sbjct 2074 TTGATCTGGGGGAATGCCTTCTTTATCTTGGATTTTAGCCTTTACGTTCTCGATAGTGTC 2133 Query 94948 AGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||| ||||| || | ||||||||||| ||||| | ||| ||||| ||||| |||| Sbjct 2134 A-CATGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCA 2192 Query 95007 T 95007 | Sbjct 2193 T 2193 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCC 94855 |||||| || | || |||||||| || | |||||| ||| | ||| || | ||| Sbjct 1756 CACCAAATGGAGTGTCGATTCCTTCTGTATGTTATAGTCGGCTAGAGTACGTCCG--TCC 1813 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || |||||||||| | ||||||||||||||||||||| || || || Sbjct 1814 TCCAGCTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGAGGAATACCCTCCTTATCT 1873 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||| || | | ||| || | | || || || | ||||| || Sbjct 1874 TGGATCTTGGCCTTTACATTTTCAATAGTATCGGATGGCTCAACTTCTAAAGTGATAGTC 1933 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || || ||||| || ||||| Sbjct 1934 TTGCCTGTCAATGTCTTGACAAAAATTTGCAT 1965 >seq44371 Length=3624 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||||||||| | ||||| || | ||||| |||||||||||||| | ||||||||| Sbjct 1093 CTCCTCCTCTGAGACGCAATACTAGATGCAACGTAGATTCCTTTTGAATGTTATAATCAG 1152 Query 94839 TCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || || || | || |||| ||||| || | || ||||| | |||||| || || Sbjct 1153 CCAAGGTTCGTCCG--TCTTCCAATTGTTTGCCAGCGAAAATTAAGCGTTGCTGGTCAGG 1210 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| ||||| | ||| || || || || | | ||| || | | || Sbjct 1211 TGGAATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATGTTCAATAGTATCCGAAGGTTC 1270 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||||||||| || ||||||||||| ||||| || ||||| Sbjct 1271 AACCTCAAGTGTGATGGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCAT 1321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447916025094720