Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq55502 107 3e-19 >seq55502 Length=1100 Score = 107 bits (118), Expect = 3e-19 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 16582 CGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCAT 16641 |||||| | |||||| || ||| |||||||||||||| ||||| ||||||||| | || Sbjct 579 CGTTATTCGCGATGCTGTCACCTACACCGAGCACGCTAAGCGTAAAACTGTCACCGCTAT 520 Query 16642 GGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 ||| | || |||||||||||||||||||| || | | || |||||||| ||||| | Sbjct 519 GGACGTTGTATATGCATTGAAACGTCAAGGACGCACCCTATACGGTTTTGGCGGTTAAGC 460 Query 16702 --TTCTAATCAAA 16712 ||| || |||| Sbjct 459 ATTTCCAAACAAA 447 Score = 102 bits (112), Expect = 1e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||||||||| || |||||||| || || |||||| |||| || |||||||| Sbjct 771 CGTGATAACATCCAAGGTATTACCAAGCCGGCCATACGTCGTTTGGCACGCCGTGGTGGT 712 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATC 16570 ||||||||| | || || | |||||||||| | |||| ||| |||||| || Sbjct 711 GTCAAGCGTATTTCAGGTCTCATCTATGAAGAAACGCGTGGTGTCTTGAAGGTC 658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79013985317736