Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq44371 145 6e-30 seq44017 120 3e-22 seq25273 116 3e-21 >seq44371 Length=3624 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||||||| | || |||||||| |||| ||||| || ||| | | Sbjct 1321 ATGCAAATTTTTGTTAAAACTCTTACGGGTAAAACCATCACACTTGAGGTTGAACCTTCG 1262 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || |||||||||||||| || |||||||| || || Sbjct 1261 GATACTATTGAACATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATTCCACCTGACCAG 1202 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || |||||||| || || || || ||| | | ||||| ||| Sbjct 1201 CAACGCTTAATTTTCGCTGGCAAACAATTGGAAGACGGACGAACCTTGGCTGATTATAAC 1142 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| ||||| || | ||| |||| ||||| Sbjct 1141 ATTCAAAAGGAATCTACGTTGCATCTAGTATTGCG 1107 >seq44017 Length=1387 Score = 120 bits (132), Expect = 3e-22 Identities = 301/455 (66%), Gaps = 12/455 (3%) Strand=Plus/Minus Query 128771 TTTGCGACTTGT--CCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATA 128828 |||||||||| | | || ||||||| ||||| | || ||||| ||||| || ||||| Sbjct 450 TTTGCGACTTTTATCAACTGTAAATTGTATAGCATTTGCAGCCGGTTTGGTACGTAAATA 391 Query 128829 GTACATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGC 128888 |||||||| ||||| | ||| |||||| | | || || | || | | | Sbjct 390 ATACATGCCAGTTTTGAGACCCGCCTTCCAACCATAAAAATGTATAGATGTTAGCTTGCC 331 Query 128889 GTAGGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCG 128948 ||| | |||| | | | |||||||| |||||||||||||||||||| | ||| || Sbjct 330 ATAGTTTGGTTCAGCTACATGTATATTAAACGATTGACTTTGATCAATAAACGCGCCACG 271 Query 128949 ATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTC 129008 ||| || ||||| || | | ||||| ||||||||||| || |||||||| || Sbjct 270 ATCAGCGGCCATCTTCATTGTAGTCTTCACCGATATTTCCCACACAGTCTTGTAAAGTTC 211 Query 129009 TCTCACGTGTTTTGGTATTTCTTCAA-----TGTTCTGCACGCTGCCGTTGTTTGCAATA 129063 | | | || |||||| ||||| ||| || || | | | ||| ||| Sbjct 210 ACGTATTTTTTGTGGTATAGATTCAATACCTTGTATTGAACCACGAC-TGGTT----ATA 156 Query 129064 ATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTAT 129123 ||||| || ||| | ||| | ||||| || || | | | |||| ||| | Sbjct 155 ATTTTAGTTTTCATTTCTTCATCCCACAAACCCAATTCGGTAAGATCGCGCAACAAATGA 96 Query 129124 TTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAAC 129183 | || | |||||||| || |||| | ||||| ||| |||||||| || | Sbjct 95 TGATTAACAACTTGAAATTCGCCCGAAAGTACGCGACGATTATAAATGTTAGAAGTATAA 36 Query 129184 GGCTCAAACGATTCATTGTTGCCTAATATTTGAGC 129218 || ||||| |||||||| ||||| | ||||| || Sbjct 35 GGTTCAAAAGATTCATTATTGCCCATAATTTGTGC 1 >seq25273 Length=2210 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || || || || || || ||||| | ||||| || | || Sbjct 1965 ATGCAAATTTTTGTCAAGACATTGACAGGCAAGACTATCACTTTAGAAGTTGAGCCATCC 1906 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || ||||| |||||||||||||| || ||||| Sbjct 1905 GATACTATTGAAAATGTAAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCAGATCAG 1846 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| ||||| ||| | ||||| || || | |||| || ||| Sbjct 1845 CAACGTTTAATCTTTGCTGGCAAGCAGCTGGAGGACGGACGTACTCTAGCCGACTATAAC 1786 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | ||||| || | || | |||||||| Sbjct 1785 ATACAGAAGGAATCGACACTCCATTTGGTGCTTCGTCTTCGCGGAGG 1739 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || || ||||| |||| | ||||| || | Sbjct 2193 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCATGT 2134 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || ||||| ||||| || || || ||||| || |||||| Sbjct 2133 GACACTATCGAGAACGTAAAGGCTAAAATCCAAGATAAAGAAGGCATTCCCCCAGATCAA 2074 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||| || || || ||| ||| || | ||||| |||||| Sbjct 2073 CAACGTTTAATTTTCGCTGGCAAGCAATTGGAAGATGGCCGTGCCTTGTCCGACTACAAC 2014 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || ||| | || || || | || ||||| || ||| Sbjct 2013 ATCCAAAAGGAGTCTACCCTTCACTTGGTCCTCCGCTTGCGTGGTGGT 1966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419385511395880