Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25273 116 9e-21 seq44371 111 4e-19 >seq25273 Length=2210 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | | || || ||||| ||||| || || ||||| Sbjct 2003 TCCTTTTGGATGTTGTAGTCGGACAAGGCACGGCCATCTTCCAATTGCTTGCCAGCGAAA 2062 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | ||| |||||| |||||| || ||||||||||| |||||||| || || ||| Sbjct 2063 ATTAAACGTTGTTGA---TCTGGGGGAATGCCTTCTTTATCTTGGATTTTAGCCTTTACG 2119 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || | | || ||||| | ||||| || || || |||| |||||| Sbjct 2120 TTCTCGATAGTGTCACATGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTC 2179 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 2180 ACGAAGATTTGCAT 2193 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || | ||| | || ||| || || || ||||||||||| Sbjct 1739 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTCGATTCCTTCTGTATGTTATAGTCGGCT 1798 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || |||||||| || | || || || || ||||| | ||| || || |||| Sbjct 1799 AGAGTACGTCCGTCCTCCAGCTGCTTGCCAGCAAAGATTAAACGTTGCTG---ATCTGGA 1855 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| ||||| || || || || ||||| |||| |||| | || Sbjct 1856 GGAATACCCTCCTTATCTTGGATCTTGGCCTTTACATTTTCAATAGTATCGGATGGCTCA 1915 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || |||| |||||||| || || ||||| Sbjct 1916 ACTTCTAAAGTGATAGTCTTGCCTGTCAATGTCTTGACAAAAATTTGCAT 1965 >seq44371 Length=3624 Score = 111 bits (122), Expect = 4e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | | ||| ||||| | ||| ||| ||||| || ||||| || || Sbjct 1094 TCCTCCTCTGAGACGCAATACTAGATGCAACGTAGATTCCTTTTGAATGTTATAATCAGC 1153 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || ||||||||||| |||||||| || ||||| || | || || || | ||| Sbjct 1154 CAAGGTTCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATTAAGCGTTGCTGGTCAGGTGG 1213 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || || || || || ||||| || | ||| |||| ||| | ||| || Sbjct 1214 AATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATGTTCAATAGTATCCGAAGGTTCAAC 1273 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || ||||| || || || || |||||| Sbjct 1274 CTCAAGTGTGATGGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCATT 1322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178642465913456