Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq66611 242 1e-59 seq66944 131 6e-26 >seq66611 Length=1920 Score = 242 bits (268), Expect = 1e-59 Identities = 371/529 (70%), Gaps = 0/529 (0%) Strand=Plus/Minus Query 52413 TGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGCTTCT 52472 |||| ||| |||| ||| | ||||| ||| | | ||||| | ||||| || || || | Sbjct 1892 TGAAAAAGCAGCTATATATTTGCCTTATGAGTGTTAATGCGCTAGAAGCGATACGTTTTT 1833 Query 52473 ATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCA 52532 | || || ||||| || || || || || ||||| ||| | | |||||||| ||||| | Sbjct 1832 ACGTAAGTTTTGCCTGTTCTTTCGCTTTTGCAGAGCGTGAACTTATGGAAGGTAATGCTA 1773 Query 52533 AGATTATTCGCTTAATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACATGC 52592 | || ||| | ||||| || || ||||| | || || || ||||||||||| || Sbjct 1772 AAATAATTAAACTTATTGCCCGTGACGAAGCGTTACACTTAACCGGAACTCAGCATATTT 1713 Query 52593 TGAACCTTCTTGCAAGTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCC 52652 | ||| | || ||||| ||||||| || ||||||| | ||||||| ||||| | Sbjct 1712 TAAACTTACTACGTAGTGGCGAAGATGATCCGGAAATGGCTAAAATTGCCAAAGAATGTC 1653 Query 52653 GCCAAGAATGCCAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATT 52712 |||| ||||| | || |||||| || ||| | || || || || ||||| || | Sbjct 1652 GCCATGAATGTTATAATATGTTCGTTTTAGCAGCTGAGCAGGAAAAAGAATGGGCAGAAT 1593 Query 52713 ATTTGTTCAAAGATGGCTCTATGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGG 52772 ||||||||| || || |||||||| || | || ||| | |||||||| ||| | | Sbjct 1592 ATTTGTTCAGTGACGGTTCTATGATAGGTCTGAATAAGGATATTCTATGGCAGTATATTG 1533 Query 52773 AATATATCACGAATATTCGTATGCAAGCAGTTGGATTAGATGCTCCATTCAAAGGTGCAA 52832 | |||||||| ||||| || ||| | ||||| | | ||| || ||||| | Sbjct 1532 AGTATATCACTAATATCCGCATGAATGCAGTCGATCTTGATCTACCCTTCAAGACCCGAT 1473 Query 52833 CTAACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCAC 52892 | ||||| || || ||||||||| | ||| | || ||| ||| || ||||| |||| Sbjct 1472 CAAACCCAATCCCTTGGATTAATTCTTGGCTAGTCTCTGATAATGTGCAAGTTGCACCAC 1413 Query 52893 AGGAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAAGT 52941 ||||| || |||| ||||| ||||||| || ||||| || ||||| Sbjct 1412 AGGAAGTTGAAGTTAGCTCCTATTTGGTCGGACAGATTGATTCTGAAGT 1364 >seq66944 Length=5658 Score = 131 bits (144), Expect = 6e-26 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 51862 TTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTTGGTCA 51921 ||| ||||| || ||||||| || ||| |||| || ||||| ||||| |||||||| Sbjct 180 TTATACTACATTCTCACAAAATAAAAATGACCAGCTAAAGGAGCCTATGTTTTTTGGTCA 121 Query 51922 GAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTGA 51981 | |||||| |||| || | ||||||||| || || || || || || ||| ||||||| Sbjct 120 GCCGGTTAACATTGCACGCTTTGACCAACAAAAATATGGTATTTTTGAAAAGCTAATTGA 61 Query 51982 GAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGA 52041 |||||| | || ||||||||||| || |||||||| || || || | || || ||||| Sbjct 60 AAAACAACTTTCTTTCTTCTGGCGTCCAGAAGAGGTGGATGTATCTCGTGATCGCATTGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169263718955088