Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq66676 96.9 4e-15 seq65063 86.0 8e-12 >seq66676 Length=2089 Score = 96.9 bits (106), Expect = 4e-15 Identities = 200/292 (68%), Gaps = 12/292 (4%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||| |||||||| || || | || ||| |||||| | |||| |||||| ||||| Sbjct 1394 CGATCGAAGCGACCAGGACGCAATAGCGCGGGGTCAAGAACATCAGGGCGGTTAGTCGCT 1453 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 ||||| |||| ||| || || ||| ||||| || ||||| ||| | | || Sbjct 1454 GCGATAACAATGATACCT---TCATTACCCTCGAAACCGTCCATATCAACTAGCATCTGG 1510 Query 12819 TTGATGGTTTGTTCACGTTCATCAT-TCGCGGGCATACCACCCGCACTGCGTTGCTTACC 12877 || | || || ||||||||||||| | || || ||| |||| ||| || ||| Sbjct 1511 TTCAATGTCTGCTCACGTTCATCATGACCACCGCCTA-AACCTGCACCGCGCTGACGACC 1569 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACG--GTTGATTTTCACGGGCAACTTCA 12935 ||||| || ||||| ||||| |||| || || | | || |||| || |||| Sbjct 1570 TACGGCATCTATTTCATCAATAAAAATAATGCATGGAGCTGCTTTT--TTTGCCTGTTCA 1627 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 || ||||| || || | ||||| ||||| || ||||| || ||||||| Sbjct 1628 AACATATCACGTACGCGAGATGCACCTACACCAACGAACATTTCAACAAAAT 1679 >seq65063 Length=1025 Score = 86.0 bits (94), Expect = 8e-12 Identities = 234/357 (66%), Gaps = 10/357 (3%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||||||||||||||| || | || ||||| | ||||| || | |||||| ||| Sbjct 753 AACCTGTGCCAATACCATCAGCACCATTCACTAATACCATCGGTATAATTGGCACATACC 694 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||||| | |||||||| | || | | | || ||||| | Sbjct 693 ATTGTGGTTCAATCTTTTGACCATCATCAACTTCGTACGTCAATAATGGATCATCAGATG 634 Query 175866 GATCAAAGATTTTACGAGCATCCTT---GGTGAGTTT--TGTGAAGATGTACCTCGTTTG 175920 ||| || || |||| | || ||||| | |||||| || || | | Sbjct 633 GATGGAATAT-----GAGCCGCGTTAATGGTGACATCAATGTGAAAATATAACGAGCACT 579 Query 175921 AGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATT 175980 || |||||||||||| |||||||| || |||||||| | ||| || || | ||| Sbjct 578 AGCACAATCTTTGCCACCTTGTAGACGCGTACCGAATTGACCGCGTGGTTCTAGTAAATT 519 Query 175981 GATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGAC 176040 || |||||||| || | ||| | | ||| || || ||||| ||| | || | Sbjct 518 AATGTTGTTTGAACCAACATAATTTTGCGCTAAATTAACAATTGTAGATTGTAATGACAT 459 Query 176041 TTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTT 176097 |||||||||||| || || ||| | || ||||| | | | ||| || ||||| || Sbjct 458 TTCACCGTGATGATAAGCAGACATTTCAGCCACTGAACCGGACAATTGTGCCACTTT 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612993755824320