Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq14245 167 2e-35 seq66578 132 4e-25 seq61428 131 1e-24 seq39072 91.5 1e-12 >seq14245 Length=1352 Score = 167 bits (184), Expect = 2e-35 Identities = 239/333 (72%), Gaps = 13/333 (4%) Strand=Plus/Minus Query 517991 TTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATT 518048 ||||| || |||||| | ||| | || ||||||||||| ||||||||||| ||||| | Sbjct 1292 TTGAACTCCTCAACAAA--ATGATTGACCAGACGATTATCGAAATCTTCACCACCCAAAT 1235 Query 518049 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCAAGAGACAAAAGAG 518105 |||| || | || | | | |||| |||||| || || |||| ||||| | | Sbjct 1234 GTGTATCACCGGCAGTTGATTTGACTTCAAAAAGTGAACCTTCATCAATGGACAATATGG 1175 Query 518106 TTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG- 518164 |||||| ||||||||||||| ||| || || | |||||| |||| | ||| Sbjct 1174 ACACATCAAAAGTTCCACCACCCAAATCGAAGATTAACACATTCTTTTC---GCCTTTCA 1118 Query 518165 --TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 |||||||| || ||||| || ||||||||||| || |||||||| ||||| | | | Sbjct 1117 AATTTTTATCCAGCCCATAGGCCAAAGCAGCAGCTGTGGGTTCATTGATAATACGTAGCA 1058 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 |||| || || |||||| || |||||||| || ||||| | ||| ||||| || | Sbjct 1057 CATTGAGGCCCGCAATTGAACCAGCATCTTTGGTCGCTTGACGTTGGCTGTCGTTGAAGT 998 Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 | || || || || || |||||||| | |||| Sbjct 997 AGGCTGGCACTGTTATGACGGCATCGGACACTT 965 >seq66578 Length=1850 Score = 132 bits (146), Expect = 4e-25 Identities = 320/482 (66%), Gaps = 12/482 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| |||| | |||||||||||| || || | ||||| | ||||||||||| || | Sbjct 1147 GCACTCACTTGAAGAATACCATTAGCGTCGATTTCAAAGGACACTTCAATTTGTGGCATA 1206 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || ||||| || || ||||| ||| | || || || |||||||| Sbjct 1207 CCACGAGGCGCTGGTGGAATACCAGTCAAATCGAATTTGCCAAGCAAATGGTTATCTTTG 1266 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGAT---TATCTGAA 517435 || | | |||||||| || ||| ||| || || ||| || || | | || ||| Sbjct 1267 GTCATTGGGCGTTCACCTTCATAAACTTGAATGGT---TACCGTGTGCTGGTTGTCGGAA 1323 Query 517436 TAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 ||| | || | | ||||| || || || ||||| | ||| | || Sbjct 1324 GCAGTAGAGAAGATTTGCGATTTCTTCGTTGGGATAACGGTGTTACGTGGAATCAATTTT 1383 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||| | ||||| | || | || | ||| ||||||||| || ||| Sbjct 1384 GTCATCACACCACCCACAGTTTCAATGCCCATAGTCAATGGATTGACATCAAGTAAAACA 1443 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 ||| | | | | ||| || |||| ||| | | | ||||| | |||||||||| Sbjct 1444 ATA----GCATCTGT--ATCTTGTTCACCAGAAAGTACACCGGCTTGTACAGCAGCACCA 1497 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||| ||||||||||| || |||| | | ||| |||| ||| || || | | Sbjct 1498 TATGCGACAGCTTCATCGGGGTTAATGCCACGAGATGGTTCTTTATTATTAAAGAAGTCT 1557 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 | ||||||| ||| || |||||||| | |||||| || ||||| ||||||||||| Sbjct 1558 TTGACAAGTTGTTGTACTTTGGGAATACGTGTTGATCCACCGACTAACACAATTTCATGT 1617 Query 517736 AC 517737 || Sbjct 1618 AC 1619 >seq61428 Length=1331 Score = 131 bits (144), Expect = 1e-24 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 518520 CATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA 518579 || ||||||||||||| | ||||| || || |||||| |||||||||||| ||||||| Sbjct 817 CACCAAAAATAGTATTATTCGGATTCATGGCTACTTGATTTTTGGCTGCATCACCAATCA 758 Query 518580 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 518639 | | || || || || || | |||||||||||||| ||||| || |||||||| | Sbjct 757 AACGCTCCGTATCGGTGAAGGCCACATATGATGGAGTAACACGATTGCCCTGATCATTGG 698 Query 518640 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 518699 | || || || ||||| |||| ||| | ||||| ||||| | | ||||| || | || Sbjct 697 CTATGATATCGACTTTGCCATGTTGAAAAACACCAACACATGAATATGTTGTGCCAAGAT 638 Query 518700 CAATACC 518706 |||| || Sbjct 637 CAATGCC 631 >seq39072 Length=1651 Score = 91.5 bits (100), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| |||||| ||||| || || | | |||| || || |||||| |||||| || Sbjct 702 TGATTTTTGGCCGCATCGCCGATTAAACGTTCGGTATCGTTAAATGCAACATAACTGGGC 761 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 || |||||||| |||||||| || ||||| || || ||||| || ||||| || || Sbjct 762 GTGGTGCGATTGCCTTGATCGTTGGCAATGATCTCGACTTTGTTGTTCTGCCAAACGCCA 821 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || | || || || |||||||||||||| || Sbjct 822 ACGCAGGAGTAGGTGGTGCCCAAATCAATACCAATTGC 859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777500021220112