Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq66944 109 6e-19 seq66733 91.5 1e-13 >seq66944 Length=5658 Score = 109 bits (120), Expect = 6e-19 Identities = 269/400 (67%), Gaps = 16/400 (4%) Strand=Plus/Plus Query 54220 TGAATACCATAGTCGATACGGCGTTCACGGTTCTCTTCAAGACCACGGTTGTTCTTCAGG 54279 |||| ||||||||| || | || ||||||| ||||| | |||||||| ||||||| | Sbjct 1527 TGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCCACGGTTATTCTTCAAG 1586 Query 54280 ACCACAACATCATCAAATTGATAATGCCAGATAGGGATATAGCAA-GTTGCTGATCCGCC 54338 |||| | | || | || | ||||| || || ||| | | ||||| | || || Sbjct 1587 ACCAGTAAACTTTCCACTTCCAAGTGCCATATTGG-ATAGAATAGTGTTGCAGCACCACC 1645 Query 54339 ACGAATACCGCCTTGAGAGCAAGACTTTAATGCCCCAGTCAGATATT--TTATGAAA--G 54394 || | ||| |||||||| ||||| || | ||| ||| || | | |||| ||| | Sbjct 1646 GCGTACACCACCTTGAGAACAAGATTTAACTGCG---GTCTGAAAGTGTTTATAAAATGG 1702 Query 54395 GAACCAGGCCTGTGTGCACCATTTCACCTTTTCGGATAGGGCTACCGATGCCACGAATTG 54454 || || || || || | ||| || | || || | || || | | |||||||| Sbjct 1703 GATACAACCC-GTATGAAAAGCTTCGCCGTCACGTATCGAACTTCCCAAGGCACGAATTC 1761 Query 54455 CTCCAACATCAAATCCGATCCCAGCGCGTTTGGATACATAATCAACAAT---ACTTTTGG 54511 || ||| || || || ||||| |||| ||| ||||| | ||||| |||| | Sbjct 1762 GACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTTCACAATTGCACTT---G 1818 Query 54512 CTGTAGCATTGATTGAGTCCAAAGTGTCACCGGTTTTGATAAGAACACAAGAACTGAATT 54571 || ||||| || || || | | ||||||| | || || || || |||||||| | Sbjct 1819 AAGTTGCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTACGCAGGAACTGAACT 1878 Query 54572 GGCGGGTTGGGGTACGAACGCCGGACATGATGGGTGTTGG 54611 |||| | || || || || ||||||||||| ||||| || Sbjct 1879 GGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTGGG 1918 >seq66733 Length=2293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 137230 TGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAA 137288 ||||||| |||||||| ||||||||| |||||||||||| |||||||||||||||| Sbjct 551 TGGCCCCATAGCTCAGACGGTTAGAGCGTGTGACTCATAATCGCTTGGTCGCTGGTTCAA 610 Query 137289 GTCCAGCCAGGGTCACCAAA 137308 ||||||| ||| ||||||| Sbjct 611 GTCCAGCTGGGGCCACCAAA 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502046685200320