Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq66611 298 1e-75 seq66944 116 7e-21 seq66733 107 3e-18 seq66893 104 4e-17 seq66562 89.7 9e-13 >seq66611 Length=1920 Score = 298 bits (330), Expect = 1e-75 Identities = 552/796 (69%), Gaps = 28/796 (4%) Strand=Plus/Plus Query 207567 TTACAGGTCTATCTCAATATCACCCTTGGGCTTTACA-CAACAAGGTAGGATCTCACCTT 207625 ||| || || || |||||||| ||||| ||| |||| || || || | |||||||||| Sbjct 1064 TTATAGCTCAATTTCAATATC-CCCTTCTGCTCTACAGCAGCAGGGCAATATCTCACCTT 1122 Query 207626 TGTTAATGAATGCTAGTGGTT-CTCT-TATCCATGTCACTTCTCCTTTGAG-AAGCTTGC 207682 | | || || | |||| | | ||| | | |||||||||||| | || | | Sbjct 1123 GCTGTACAAAGGCCAACGGTTTCGCGCTATACTT--CACTTCTCCTTTTAACAAACGAGT 1180 Query 207683 AACGACAAGAACCACAATAACCTTCACGACATTGGTACTCCACCTCTACCTGATTGGCCT 207742 | ||||| |||||||| |||||||| ||||| || || ||||| || |||| || Sbjct 1181 A-CGACATGAACCACAGTAACCTTCGCGACACTGATATTCCACACACACGTGATGCAGCT 1239 Query 207743 CTAGGGCAGCAAGTAAAGAAGGATGTTCTCCTTTTACTTCAACTTCTTTATCTA----GC 207798 | || ||||| || ||||||| || | | | ||||| | | | | || Sbjct 1240 CCAGTGCAGCTAGCAAAGAAGAGGGTCCATCATGACATTCAAGCTGTGCACCGGAAGTGC 1299 Query 207799 TTAA----ATAGCTTGATCAGAC-----TCATTACAGTTGGAAATCACC--GAAC-TCGG 207846 ||| |||| | || || | | |||| |||| ||| || | || | |||| Sbjct 1300 GTAATATAATAG-TGGAACAAGCCATCGTAATTATAGTTCGAATTCTCTAAGATCATCGG 1358 Query 207847 CAGTATCTACTTCTGAGTCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAG 207906 || | ||||| || || ||||| || |||| || || |||||| |||||||| | Sbjct 1359 CACTG---ACTTCAGAATCAATCTGTCCGACCAAATAGGAGCTAACTTCAACTTCCTGTG 1415 Query 207907 GAGCAACCTGAACGTTGTCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAGT 207966 | ||||| || || || |||| || ||||| || |||||||| || |||||||| || Sbjct 1416 GTGCAACTTGCACATTATCAGAGACTAGCCAAGAATTAATCCAAGGGATTGGGTTTGATC 1475 Query 207967 TGGTTTTGAATGGAAGATCCAAACCGATCGCCTGCATACGGATGTTGGTAATGTACTCAA 208026 ||| ||||| || ||||| | | ||| || | ||| ||||| || || || ||||||| Sbjct 1476 GGGTCTTGAAGGGTAGATCAAGATCGACTGCATTCATGCGGATATTAGTGATATACTCAA 1535 Query 208027 CATACTGGCAGAGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGT 208086 |||||| || || || || || |||||||| ||||| ||||| || |||||| ||| | Sbjct 1536 TATACTGCCATAGAATATCCTTATTCAGACCTATCATAGAACCGTCACTGAACAAATATT 1595 Query 208087 CAGCCCACTCTTTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGAC 208146 | ||||| |||||||| |||| ||| | ||||||||| | || | || || |||| Sbjct 1596 CTGCCCATTCTTTTTCCTGCTCAGCTGCTAAAACGAACATATTATAACATTCATGGCGAC 1655 Query 208147 ACTCTGCTGCAATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGA 208206 | ||| ||||| | |||||| || |||||||||| ||| | | ||| | | Sbjct 1656 ATTCTTTGGCAATTTTAGCCATTTCCGGATCATCTTCGCCACTACGTAGTAAGTTTAAAA 1715 Query 208207 TGTGCTGAGTACCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAG 208266 | |||||||| || | ||| | ||||||||||| || || | ||| || || |||| Sbjct 1716 TATGCTGAGTTCCGGTTAAGTGTAACGCTTCGTCACGGGCAATAAGTTTAATTATTTTAG 1775 Query 208267 CGTTACCTTCCATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGA 208326 | ||||||||||| || | ||| || ||||| ||||| || || || || |||||| | Sbjct 1776 CATTACCTTCCATAAGTTCACGCTCTGCAAAAGCGAAAGAACAGGCAAAACTTACGTAAA 1835 Query 208327 AACGAATAGCTTCAAG 208342 |||| || ||||| || Sbjct 1836 AACGTATCGCTTCTAG 1851 >seq66944 Length=5658 Score = 116 bits (128), Expect = 7e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 208767 TCAATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGTTTC 208826 ||||| || ||||| || ||||| || ||||| |||||||||||||||||||||||||| Sbjct 1 TCAATGCGATCACGAGATACATCCACCTCTTCTGGACGCCAGAAGAAAGAAAGTTGTTTT 60 Query 208827 TCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGTCGTAACGAGAAACGTTGACGTTT 208886 ||||| || || ||||| || |||| || |||||||| | || | || ||| || Sbjct 61 TCAATTAGCTTTTCAAAAATACCATATTTTTGTTGGTCAAAGCGTGCAATGTTAACCGGC 120 Query 208887 TGACCCAGGAACATGTGTTCTTGTAATTGATCGTTTTTGTTTTG 208930 ||||| | ||||| | || | || || || ||||| ||||| Sbjct 121 TGACCAAAAAACATAGGCTCCTTTAGCTGGTCATTTTTATTTTG 164 >seq66733 Length=2293 Score = 107 bits (118), Expect = 3e-18 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 16027 TTAAATG-AAATTATGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGT 16085 |||||| ||| | |||||||||| || ||||||||| |||||||||||||||||||| Sbjct 642 TTAAATCTAAACTTTGGTGGCCCCAGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT 583 Query 16086 CACCTGCTCTAACCGTCTGAGCTACGGGGCCGGA 16119 ||| ||||||||||||||||||| |||||| || Sbjct 582 CACACGCTCTAACCGTCTGAGCTATGGGGCCAGA 549 >seq66893 Length=3550 Score = 104 bits (114), Expect = 4e-17 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 16119 AATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCTTAGAAGGCTACTGCTCTAT 16178 ||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||| Sbjct 1719 AATGGTGCGCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCTGGTGCTCTAT 1660 Query 16179 CC-ACTGAGCTAAGAGCGC 16196 || ||||||||||| |||| Sbjct 1659 CCAACTGAGCTAAGGGCGC 1641 >seq66562 Length=1824 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/76 (88%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 16835 TGACAGGGCTCGAACCTGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTA 16894 |||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1236 TGACTGGATTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCTGCTGAACTA 1295 Query 16895 CACGAGCTAAATTCTT 16910 || ||| |||||||| Sbjct 1296 CA-GAG-GAAATTCTT 1309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910331905096640