Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq66944 248 1e-60 >seq66944 Length=5658 Score = 248 bits (274), Expect = 1e-60 Identities = 384/543 (71%), Gaps = 24/543 (4%) Strand=Plus/Minus Query 40448 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 40507 ||| | ||| | || || ||||| ||| | |||||||| || |||| ||||||||| Sbjct 1930 AAAATTTCTTTGCCCACACCAATCATGTCCGGTGTACGCACACCTATTCGCCAGTTC--- 1874 Query 40508 AGTT---GTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTC- 40563 |||| | ||| ||||||| || |||||| || | ||| |||| || ||| || Sbjct 1873 AGTTCCTGCGTACTAATTGAGTCCGGTGATAGCCTCGATTCGATTAATGC---AACTTCA 1817 Query 40564 --TGCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATT 40621 ||| || ||||| ||| |||| ||||| ||||||||||| |||| || || | ||| Sbjct 1816 AGTGCAATTGTGAAATATGTTTCCCAACGGGCTGGTATTGGCATTAATGCCGGTCGAATT 1757 Query 40622 CGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGGTGTGATTCCTTTC 40681 || || |||| | || |||| || |||||| ||||||| ||| || || || Sbjct 1756 CGTGCCTTGGGAAGTTCGATACGTGACGGCGAAGCTTTTCATACGGGTTGTATCCCATTT 1697 Query 40682 TGGAAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCT 40741 | ||||| |||| ||||| |||||||| ||||| || ||||| || || ||||||||| Sbjct 1696 TATAAACACTTTCAGACCGCAGTTAAATCTTGTTCTCAAGGTGGTGTACGCGGTGGTGCT 1637 Query 40742 GCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAAC 40801 |||||||| | ||||| | ||||| ||||||| |||| | ||||| |||||||| Sbjct 1636 GCAACACTATTCTATCCAATATGGCACTTGGAAGTGGAAAGTTTACTGGTCTTGAAGAAT 1577 Query 40802 AACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAACCAG 40861 ||| ||||||||||| ||||| |||||||| | || |||||||| || | || | Sbjct 1576 AACCGTGGCGTAGAAGATAACCGTGTTCGTCACATGGACTATGGTGTTCAATTGAATAAA 1517 Query 40862 TTGATGTATAAACGCTTAATGAATCGTGATTACATTACGCTGTTTAGTCCG---GATGTT 40918 |||||||| | ||| || | | | | ||||| || ||||||||| |||| | Sbjct 1516 CTGATGTATCAGCGCCTACTCCAGGGAAGAGATATTACTCTATTTAGTCCGTCAGATG-T 1458 Query 40919 GCTAACGATCGTCTGTATGATCTGTTCTATGAAGCTGATCAGACTGCATTTGAAGAACTG 40978 || | |||| || ||| |||| | ||||||||| | ||||||| ||| Sbjct 1457 GCCA-----GGTCTATACGATGCATTCTTT---GCTGATCAGGAAGAATTTGAACTCCTG 1406 Query 40979 TAT 40981 ||| Sbjct 1405 TAT 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557526615156160