Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq66944 205 1e-47 seq66648 91.5 2e-13 >seq66944 Length=5658 Score = 205 bits (226), Expect = 1e-47 Identities = 515/774 (67%), Gaps = 29/774 (4%) Strand=Plus/Minus Query 27212 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 27271 || || || ||||| |||| ||| | || |||| ||||| || ||||| ||| | ||| Sbjct 1957 CGCTTCTACGATGCTATTTCAACTTTTAAAATTTCTTTGCCCACACCAATCATGTCCGGT 1898 Query 27272 GCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTGATTCGTTA 27331 | || || || | |||||||||| | || ||| | ||||| |||||||| | Sbjct 1897 GTACGCACACCTATTCGCCAGTTCAGTTCCTGCGTACTAATTGAGTCCGGTGATAGCCTC 1838 Query 27332 AAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGTATA 27391 | || ||||| ||||||| ||||| | ||||| |||| |||| |||||||| Sbjct 1837 GATTCGATTAATGCAACTTCAAGTGCAATTGTGAAATATGTTTCCCAACGGGCTGGTATT 1778 Query 27392 GGTATCAACGTTGGTATGCTTCGTGCA---GAAGGTTCTAAGATCGGTATGGGTGAAGTT 27448 || || || | ||| ||||||| | | |||| ||| || || |||| | Sbjct 1777 GGCATTAATGCCGGTCGAATTCGTGCCTTGGGAAGTTC---GATACGTGACGGCGAAGCT 1721 Query 27449 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 27508 ||||||||| ||| ||||| | ||||| || || || ||||| |||||||||||| Sbjct 1720 TTTCATACGGGTTGTATCCCATTTTATAAACACTTTCAGACCGCAGTTAAATCTTGTTCT 1661 Query 27509 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 27568 ||||||||| | || ||||||||||| ||| | ||||| || |||||||| ||||| Sbjct 1660 CAAGGTGGTGTACGCGGTGGTGCTGCAACACTATTCTATCCAATATGGCACTTGGAAGTG 1601 Query 27569 GAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTCGACATATG 27628 || | || | || |||| ||||| || || || || |||||| |||| || ||| Sbjct 1600 GAAAGTTTACTGGTCTTGAAGAATAACCGTGGCGTAGAAGATAACCGTGTTCGTCACATG 1541 Query 27629 GACTACGGAATTCAGATTAATGACCTTATGATGGAACGCCT-----TGGTAAAAATGATT 27683 ||||| || |||| | ||| | || ||| | ||||| || || | Sbjct 1540 GACTATGGTGTTCAATTGAATAAACTGATGTATCAGCGCCTACTCCAGGGAAGA-----G 1486 Query 27684 ATATTACTTTATTTAG-CCCTCACGAAATGTCAGGCGAACTATACTACTCGTTCTTTGAA 27742 |||||||| ||||||| || ||| || || |||| |||||| | | ||||||| Sbjct 1485 ATATTACTCTATTTAGTCCGTCA-GATGTGCCAGG---TCTATACGATGCATTCTTTGCT 1430 Query 27743 GATCAAGATAAATTCCGTGA---GCTTTATGAGAAAGCTGAAAAAGA-CCCAACAATCAG 27798 ||||| || |||| ||| || ||| ||| ||||||| | |||| ||| | Sbjct 1429 GATCAGGAAGAATT---TGAACTCCTGTATACAAAATATGAAAAAAATGACAAC-ATCCG 1374 Query 27799 AAAGAAAAGAATCAAAGCACTAGAACTCTTTGAATTGTTCATGACTGAACGTTCTGGCAC 27858 ||| |||| | ||||| | || || ||| ||| | ||| ||||| | || Sbjct 1373 AAAACAAAGTTTAAAAGCCATTGACCTATTTTCATTAATGATGCAAGAACGCGCATCAAC 1314 Query 27859 TGCTCGAATTTATCCACAGTTTGTTGACAACACGAATAACTATACTCCATTTATTCGCGA 27918 | ||| || ||| ||| |||||| || |||| ||| || |||| || | Sbjct 1313 CGGTCGTATATATATCCAGAACGTTGACCACTGCAATACGCATAGCCCGTTTAATCCAGC 1254 Query 27919 AAAAGCTCCAATTCGCCAGAGTAACTTATGTTGTGAAATCGCTATTCCAACTAA 27972 | |||||| | | |||| |||||||| | ||||| | | |||||||| Sbjct 1253 CATTGCTCCAGTGCACCAGTCCAACTTATGCTTGGAAATTGTCTTACCAACTAA 1200 >seq66648 Length=2014 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 35940 GTGATGCGCGTTTATTTTGAAAAGCCTCGAACTACCGTAGGTTGGAAAGGTCTTG-TAAA 35998 || ||||| ||||| |||||||| || || ||||| || || |||||||| |||| | || Sbjct 440 GTAATGCGAGTTTACTTTGAAAAACCCCGTACTACTGTTGGCTGGAAAGG-CTTGATTAA 382 Query 35999 TGATCCATATCTTGACGGAAGTTTTGATATG-AACCACGGTCTT-ATAGTTGCACGAACA 36056 |||||| || | || | |||||||||| || || ||||| ||| |||||||| Sbjct 381 TGATCCGAATATGGATAACACTTTTGATATGGAAGCA-GGTCTACATA-TTGCACGACAG 324 Query 36057 TTGTGTCGTAAACTTCTACGTATAGGACTTCCATTAGCAACTGAAGTATTAGACCCATTC 36116 || | || ||| | || ||||||||| |||| ||||||| | | || || Sbjct 323 TTATTATTGAATCTTGTTGAGATGGGACTTCCACTAGCTACTGAAGCACTGGATCCTAAT 264 Query 36117 ACGATTAAGTATCTTTCTGGTATTTTCTCATGGGTTGCTATTGGCGCCCGTACGACTGAA 36176 | | |||||||| | | | ||| ||| |||||||| || || || || ||| Sbjct 263 AGTCCTCAGTATCTTGGCGATCTCTTCAGCTGGTCAGCTATTGGAGCACGCACTACAGAA 204 Query 36177 AGTCAGACACATCGTGAAATTGCTTCAGGT 36206 || || ||||||||||| || || ||| Sbjct 203 TCACAAACTCATCGTGAAATGGCCTCTGGT 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540692715247360