Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25273 188 1e-42 seq44371 154 3e-32 seq66546 84.2 4e-11 >seq25273 Length=2210 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || || ||||| |||||||| ||||| || | | Sbjct 1739 CCTCCGCGAAGACGAAGCACCAAATGGAGTGTCGATTCCTTCTGTATGTTATAGTCGGCT 1798 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||||| || || || || ||||||||||||| | ||| ||||||||||| Sbjct 1799 AGAGTACGTCCGTCCTCCAGCTGCTTGCCAGCAAAGATTAAACGTTGCTGATCTGGAGGA 1858 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||||||||| ||||| || |||||||||||||| ||||| || || ||| Sbjct 1859 ATACCCTCCTTATCTTGGATCTTGGCCTTTACATTTTCAATAGTATCGGATGGCTCAACT 1918 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || |||||||||||||| ||||| ||||| || ||||| Sbjct 1919 TCTAAAGTGATAGTCTTGCCTGTCAATGTCTTGACAAAAATTTGCAT 1965 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || || ||||| || ||||| || || || || || || || | Sbjct 1965 TACCACCACGCAAGCGGAGGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGG 2024 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | || ||||| | ||| || ||||| || |||| | |||||||||||| | Sbjct 2025 ACAAGGCACGGCCATCTTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGG 2084 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || || || ||||| || || || || ||| || || | Sbjct 2085 GAATGCCTTCTTTATCTTGGATTTTAGCCTTTACGTTCTCGATAGTGTCACATGGCTCGA 2144 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || ||||| ||||| ||||| || || || ||||| Sbjct 2145 CTTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 2193 >seq44371 Length=3624 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||||| |||| |||| |||||||| || || || |||||||||| Sbjct 1095 CCTCCTCTGAGACGCAATACTAGATGCAACGTAGATTCCTTTTGAATGTTATAATCAGCC 1154 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | ||| |||||||| | |||||| ||||| || |||| | ||| || || || || Sbjct 1155 AAGGTTCGTCCGTCTTCCAATTGTTTGCCAGCGAAAATTAAGCGTTGCTGGTCAGGTGGA 1214 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||||||||| ||||| |||| |||||| ||||| |||||| || Sbjct 1215 ATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATGTTCAATAGTATCCGAAGGTTCAACC 1274 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || || | || || ||||| || |||||| Sbjct 1275 TCAAGTGTGATGGTTTTACCCGTAAGAGTTTTAACAAAAATTTGCATT 1322 >seq66546 Length=1799 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 143958 GAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTTAGGAGATGG 144017 || ||| | |||||| ||| | | ||||| || |||||||||||| | | | |||| Sbjct 997 GAATGGTCCACTTGGCAAAGGAGAGGTGATCCGGTATTGCATATAGAATTGGGTAAATGG 1056 Query 144018 GCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATAGCCAATGGT 144077 |||||| || | | ||||| || |||| |||||||| |||||||||||| ||| ||| Sbjct 1057 GCTGATATTATGCTGATAGCACCATTAAGCGCAAATACATTAGCAAAAATA-TCAACGGT 1115 Query 144078 ATA 144080 ||| Sbjct 1116 ATA 1118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980984966536728