Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq65063 104 6e-17 seq65790 93.3 1e-13 seq49446 84.2 5e-11 >seq65063 Length=1025 Score = 104 bits (114), Expect = 6e-17 Identities = 332/504 (66%), Gaps = 12/504 (2%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCCT 279865 || ||| || || |||| |||| | ||||| ||| ||| | ||||| || || Sbjct 264 GACTTTGTTAATCTAGAATTGATTCTCTTTTCCAATGCGGATAATGTACGTTCAATACCA 323 Query 279866 CATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGA 279925 | | | |||||||| ||||| || ||||| |||| || | || |||||| | Sbjct 324 TGTCTTGTTGATGGTTTTAAACCGGGTCAACGTAAAGTTATGTTTACATGCTTCAAACGT 383 Query 279926 AAATTGGTAAAGG--AAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATG-CA 279982 || || ||| | || || || || || || | |||| || | ||| ||| | Sbjct 384 AA--TGACAAACGCGAAGTTAAAGTGGCACAATTGTCCGGTTCAGTGGCTGAA-ATGTCT 440 Query 279983 GGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTT 280042 | |||||||||||||||| ||| | ||| | | ||||| | | || ||| ||| | Sbjct 441 GCTTATCATCACGGTGAAATGTCATTACAATCTACAATTGTTAATTTAGCGCAAAATTAT 500 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCAC 280102 | | |||||||||| | ||| | || |||| |||||||| ||| | ||| | || Sbjct 501 GTTGGTTCAAACAACATTAATTTACTAGAACCACGCGGTCAATTCGGTACGCGTCTACAA 560 Query 280103 AATGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAAAC 280162 ||| |||||| || |||||||||||| || |||| | ||| |||| | | Sbjct 561 GGTGGCAAAGATTGTGCTAGTGCTCGTTATATTTTCACATTGATGTCA-CCATTA-ACGC 618 Query 280163 AAGT--TATT-TATCAATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTT 280219 | |||| ||| | |||||| || | | ||| || || |||||||||| Sbjct 619 GGCTCATATTCCATCCA-TCTGATGATCCATTATTGACGTACGAAGTTGATGATGGTCAA 677 Query 280220 GCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAA 280279 ||||||||| || |||| |||||||| || ||| | | || ||||||||| | Sbjct 678 AAGATTGAACCACAATGGTATGTGCCAATTATACCGATGGTATTAGTGAATGGTGCTGAT 737 Query 280280 GGAATTGGAACAGGTTATTCTACA 280303 || ||||| ||||||| || ||| Sbjct 738 GGTATTGGCACAGGTTGGTCCACA 761 >seq65790 Length=1209 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||| || |||||||||||||| || ||| |||| | | || Sbjct 777 GTACTATTCAATCGTCAACCTTCGCTGCATAAAATGTCCATTATGTGTCATCAGGCTAAG 718 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | | ||||| || || || | | | || || ||||| || ||||| ||| Sbjct 717 GTGCAACCGCAACGTACATTCCGTTTTAACGAATGCGCATGCACGCCATACAATGCTGAT 658 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||||||||| | ||| |||| ||| Sbjct 657 TTTGATGGTGATGAAATGAATTTACATTTACCACAA 622 >seq49446 Length=1316 Score = 84.2 bits (92), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 304887 TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGG--CATC 304944 |||||| |||| ||||||| | || |||||||| || |||| | | ||| | | | Sbjct 334 TACAATTTCATGTTGCAACGCTCATTGATAATGAGATGACTGG--TGAAGCACGTGCTTT 277 Query 304945 TCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCG 305004 |||| || || | ||| | ||| |||| | | || | || ||||||||||| || Sbjct 276 ACAAAAGTCAGGACGCCCTCTTAAGAGTATCAAGTCTCGTTTGAAGGGTAAAGAGGGCCG 217 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 ||| || ||||| ||||||| |||||||| ||||| || | | ||| || ||||| Sbjct 216 TATACGTGGTAACTTAATGGGTAAACGTGTGGATTTCTCAGCGCGTACTGTTATAACACC 157 Query 305065 TGAT 305068 |||| Sbjct 156 TGAT 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185794725276872