Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq66944 194 2e-44 seq66648 96.9 4e-15 >seq66944 Length=5658 Score = 194 bits (214), Expect = 2e-44 Identities = 378/554 (68%), Gaps = 21/554 (4%) Strand=Plus/Plus Query 141783 AATTTATCTTGATCTTCAAAGAATGAGTAATATAGTTCGCCTGACATTTCGTGAGGG-CT 141841 |||| || ||||| ||||||||| | ||||| |||| || || ||| || || Sbjct 1416 AATTCTTCCTGATCAGCAAAGAATGCATCGTATAGA---CCTGGCACATC-TGACGGACT 1471 Query 141842 AAATAAAGTAATATAATCATTTTTACCA-----AGGCGTTCCATCATAAGGTCATTAATC 141896 ||||| |||||||| | || || ||||| | ||| || | ||| | Sbjct 1472 AAATAGAGTAATATC-----TCTTCCCTGGAGTAGGCGCTGATACATCAGTTTATTCAAT 1526 Query 141897 TGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGA 141956 |||| || |||||||| || |||| |||||| || || || || |||||| |||| Sbjct 1527 TGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCCACGGTTATTCTTCAAG 1586 Query 141957 ACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCG 142016 || | || | || ||||| |||||||| || ||||| | ||| |||||||| ||| Sbjct 1587 ACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGATAGAATAGTGTTGCAGCACCACCG 1646 Query 142017 CGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATA 142076 || | ||||||||||||||||||||| ||||| || || || ||||| | ||||| ||| Sbjct 1647 CGTACACCACCTTGAGAACAAGATTTAACTGCGGTCTGAAAGTGTTTATAAAATGGGATA 1706 Query 142077 ACACCTGTATGTCGAACTTCACCCATACCGATCTTAGAACCTTC---TGCACGAAGCATG 142133 ||| ||||| | |||| || || ||| |||| | | ||||||| Sbjct 1707 CAACCCGTATGAAAAGCTTCGCCGTCACGTATC---GAACTTCCCAAGGCACGAATTCGA 1763 Query 142134 CCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCGATAATTGATGCTGAAGTT 142193 || | || || || |||||||| |||| |||| ||||| | ||||| ||||||| Sbjct 1764 CCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTTCACAATTGCACTTGAAGTT 1823 Query 142194 TTGTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAACTGGCGA 142253 ||||| || | | |||||||| ||||| | ||| || | |||||||||| Sbjct 1824 GCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTACGCAGGAACTGAACTGGCGA 1883 Query 142254 GTCGGAGTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAACTTGATGAGTAGAAACG 142313 | || || || |||| | ||| ||||| || ||||| |||| || | ||| |||| Sbjct 1884 ATAGGTGTGCGTACACCGGACATGATTGGTGTGGGCAAAGAAATTTTAAAAGTTGAAATA 1943 Query 142314 GCATCATAAAAACG 142327 ||||| || || || Sbjct 1944 GCATCGTAGAAGCG 1957 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 140949 GGAACTACTTGACGGAAATTACCTTCTTTAGATTCTTTAATACTTACTGGGCCACGAGGT 141008 || || ||||| || | | | || ||||| ||| ||||||| || | | ||||||||| Sbjct 570 GGTACGACTTGGCGAAGAATGCCATCTTTTGATGCTTTAATGCTGATATGACCACGAGGT 629 Query 141009 GGTTCAATACCATTTGTGCTATTTGAGACCTG-GCTGCTTGATTCGCATGGCATGAGAGC 141067 |||||||||||||| || || || | ||| | || || ||| | ||||| || || Sbjct 630 GGTTCAATACCATTGGTCGCGTTAGATATCTGCGATG-ATGTTTCAGAAGGCATCAGTGC 688 Query 141068 ACTGAGTGTACTGTTACGGATCCCGTGTTCTTTAAGTTCGGCTCGTAGTTCTTCCCAGTC 141127 | || ||| |||||| | |||| |||||| | | ||||||||||||||||| Sbjct 689 AGATAGAGTAGAGTTACGTAGACCGTAGACTTTAATTGATTCGCGTAGTTCTTCCCAGTC 748 >seq66648 Length=2014 Score = 96.9 bits (106), Expect = 4e-15 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 133328 ACCTGAAGCAATTTCACGATGTGTCTGACTTTCAGTCGTACGGGCGCCAATAGCAACCCA 133387 ||| || || ||||||||||| || || ||| || || || || |||||||| ||| Sbjct 174 ACCAGAGGCCATTTCACGATGAGTTTGTGATTCTGTAGTGCGTGCTCCAATAGCTGACCA 233 Query 133388 TGAGAAAATACCAGAAAGATACTTAATCGTGAATGGGTCTAATACTTCAGTTGCTAATGG 133447 ||| | | | |||||||| | | || || | | ||||||| |||| ||| Sbjct 234 GCTGAAGAGATCGCCAAGATACTGAGGACTATTAGGATCCAGTGCTTCAGTAGCTAGTGG 293 Query 133448 AAGTCCCATACGTAGAAGTTTACGACACAATGTTCGTGCAACTAT-AAGACCGTGGTT-C 133505 ||||||||| | ||| || | || |||||||| ||| ||||| || || | Sbjct 294 AAGTCCCATCTCAACAAGATTCAATAATAACTGTCGTGCAA-TATGTAGACC-TGCTTCC 351 Query 133506 ATATCAAAACTTCCGTCAAGATATGGATCATTTA-CAAGACCTTTCCAACCTACGGTAGT 133564 ||||||||| | || | || |||||||| | |||| |||||||| || || ||||| Sbjct 352 ATATCAAAAGTGTTATCCATATTCGGATCATTAATCAAG-CCTTTCCAGCCAACAGTAGT 410 Query 133565 TCGAGGCTTTTCAAAATAAACGCGCATCAC 133594 || || |||||||| ||||| ||||| || Sbjct 411 ACGGGGTTTTTCAAAGTAAACTCGCATTAC 440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534841616133760