Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq66944 178 3e-39 seq66893 86.0 1e-11 >seq66944 Length=5658 Score = 178 bits (196), Expect = 3e-39 Identities = 525/799 (66%), Gaps = 18/799 (2%) Strand=Plus/Minus Query 128389 TATGTTAAGAAGTTCTATGATGCTATTAGTACTTTTGATATTAGTTTACCAACTCCGATT 128448 ||||| ||| ||||| ||||||||| |||||| | ||| ||| || || || || Sbjct 1966 TATGTAAAGCGCTTCTACGATGCTATTTCAACTTTTAAAATTTCTTTGCCCACACCAATC 1907 Query 128449 ATGTCCGGTCTTCGCACTAATACACGTCAGTTCTCAAGTTGTGTAGTACTGAATGTT--- 128505 ||||||||| | ||||| || || |||||| |||| ||||| | || Sbjct 1906 ATGTCCGGTGTACGCACACCTATTCGCCAGTTC---AGTTCCTGCGTACTAATTGAGTCC 1850 Query 128506 GGCGATAGTCTTGATAGTATTGGTTCCAGTAATCA--TGCAATCCTGCGTTATATTTCAC 128563 || ||||| || ||| ||| | | | | ||| |||||| || ||| |||| | Sbjct 1849 GGTGATAGCCTCGATTCGATTAATGCAACT--TCAAGTGCAATTGTGAAATATGTTTCCC 1792 Query 128564 GTAAAGCAGGGCTTGGTGTTAATATGGGACGTATTCGTGCAATTGATTCTGCAATTCGTG 128623 || || |||| ||||| || || |||||||| | | | | || |||| Sbjct 1791 AACGGGCTGGTATTGGCATTAATGCCGGTCGAATTCGTGCCTTGGGAAGTTCGATACGTG 1732 Query 128624 ATGGCGATGCAGTACATACTGGT-GTAGTACCATTCTTATCTGCATTAGCAAAAA-CTGT 128681 | ||||| || | ||||| ||| ||| | ||||| |||| || | || | | || Sbjct 1731 ACGGCGAAGCTTTTCATACGGGTTGTA-TCCCATT-TTATAAACACTTTCAGACCGCAGT 1674 Query 128682 CAAAAGCTGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTCCAATGTG 128741 ||| ||||| || || |||||| | || || || ||||| || | |||||| || Sbjct 1673 TAAATCTTGTTCTCAAGGTGGTGTACGCGGTGGTGCTGCAACACTATTCTATCCAATATG 1614 Query 128742 GCATTTGGAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAATTTAACCG 128801 ||| |||||| | |||| | | | || |||| ||||| || ||| |||||| Sbjct 1613 GCACTTGGAAGTGGAAAGTTTACTGGTCTTGAAGAATAACCGTGGCGTAGAAGATAACCG 1554 Query 128802 AGTAAGACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGATTGATTGA 128861 || | || |||||||| | | ||| | ||||| | ||||| || | | | Sbjct 1553 TGTTCGTCACATGGACTATGGTGTTCAATTGAATAAACTGATGTATCAGCGCCTACTCCA 1494 Query 128862 TGGAAAAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGATGCATTTTG 128921 |||| ||| ||||| | ||||| || ||||| || | |||||| |||||||| | Sbjct 1493 GGGAAGAGATATTACTCTATTTAGTCCGTCAGATGTGCCAGGTCTATACGATGCATTCTT 1434 Query 128922 TGCTGATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGATGAAACTATTCG 128981 ||||||||| ||||||||||||| ||||||| || |||||| |||| | || || Sbjct 1433 TGCTGATCAGGAAGAATTTGAACTCCTGTATACAAAATATGAAAAAAATGACAACATCCG 1374 Query 128982 TAGGAAAACTATGCCAGCGATTGAAGCATTTAGTCAT--CTAATACAAGAGCGTGCAGAA 129039 | ||| | | ||| ||||| |||| |||| | || ||||| || ||| | Sbjct 1373 AAAACAAAGTTTAAAAGCCATTGACCTATTT--TCATTAATGATGCAAGAACGCGCATCA 1316 Query 129040 ACTGGCCGCATTTATATTCAGAATATTGATAATGCCAATGAGCATGGTTCATTTATTCCA 129099 || || || || ||||| ||||| |||| | |||| |||| | | |||| |||| Sbjct 1315 ACCGGTCGTATATATATCCAGAACGTTGACCACTGCAATACGCATAGCCCGTTTAATCCA 1256 Query 129100 GAAATTGCACCAATTGAGCAAAGTAATTTGTGTCAGGAAATTGATTTACCATCTGTTCCA 129159 | ||||| ||| | | || || || || |||||||| |||||| || ||| Sbjct 1255 GCCATTGCTCCAGTGCACCAGTCCAACTTATGCTTGGAAATTGTCTTACCAACTAAACCA 1196 Query 129160 TTTGAAGATATTAATAATG 129178 | |||||||||| ||| Sbjct 1195 CTGCTAGATATTAATGATG 1177 >seq66893 Length=3550 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 178964 CCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCC 179023 ||||||| ||||||||||||| || | ||||||||||| ||||||||| ||||||| ||| Sbjct 1644 CCCTTAGCTCAGTTGGATAGAGCACCAGCCTTCTAAGCCGTAGGTCACAGGTTCGAATCC 1703 Query 179024 AGTAGGG 179030 |||||| Sbjct 1704 TGTAGGG 1710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108043878965048