Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq66944 181 1e-40 seq66660 89.7 6e-13 >seq66944 Length=5658 Score = 181 bits (200), Expect = 1e-40 Identities = 293/420 (70%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 138869 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138928 ||||| | ||||| ||||||||||| ||||| ||||||| ||||| ||||||||||| Sbjct 1511 CATCAGTTTATTCAATTGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCC 1570 Query 138929 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138988 |||||| ||||| || || | | |||| |||||||| ||||| || ||||| | Sbjct 1571 ACGGTTATTCTTCAAGACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGATAGAATAG 1630 Query 138989 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 139048 || ||||| || || || | ||||| || || || |||||||| || |||||||| || Sbjct 1631 TGTTGCAGCACCACCGCGTACACCACCTTGAGAACAAGATTTAACTGCGGTCTGAAAGTG 1690 Query 139049 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 139108 ||| |||| || ||| ||| ||||| |||| || | || | |||| | | Sbjct 1691 TTTATAAAATGGGATACAACCCGTATGAAAAGCTTCGCC---GTCACGTATCGAACTTCC 1747 Query 139109 ---GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAAC 139165 ||||||||| ||| | ||||| ||||| ||||| |||| || | ||||| || Sbjct 1748 CAAGGCACGAATTCGACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTTCAC 1807 Query 139166 AATTGAAGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACA 139225 ||||| | |||| ||| || || | | ||| || | |||||| | || || Sbjct 1808 AATTGCACTTGAAGTTGCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTACGCA 1867 Query 139226 TGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 139285 ||||| ||||| ||| | || || || ||| | ||| || || || || || ||||| Sbjct 1868 GGAACTGAACTGGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTGGGCAAAGAAAT 1927 >seq66660 Length=2041 Score = 89.7 bits (98), Expect = 6e-13 Identities = 90/113 (80%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 68798 GCTCTACCAAACTGAGCTACA-CGGAGTAGATTAAATTGGAGCGGATAATGAGAATCGAA 68856 |||||||| | || ||||| | | | || | |||| ||||||||| | | |||||||| Sbjct 1055 GCTCTACCGA-CTAAGCTATATCAGCGTGGTTTAATTTGGAGCGGGCAGCGGGAATCGAA 997 Query 68857 CTCACATCATCAGATTGGAAGTCTGAGGTAAT-ACCATTATACGATATCCGCA 68908 | | | ||||||| ||||||| |||||||||| ||||||||||||| ||||| Sbjct 996 CCCGCGTCATCAGCTTGGAAGGCTGAGGTAATAACCATTATACGATGCCCGCA 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536334765470400