Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq66944 208 8e-49 seq66660 86.0 7e-12 >seq66944 Length=5658 Score = 208 bits (230), Expect = 8e-49 Identities = 299/420 (71%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 81493 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 81552 ||||| | ||||| ||||||||||| ||||| ||||||| ||||| ||||||||||| Sbjct 1511 CATCAGTTTATTCAATTGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCC 1570 Query 81553 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 81612 |||||| ||||| || || | | |||| |||||||| ||||| || ||||| | Sbjct 1571 ACGGTTATTCTTCAAGACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGATAGAATAG 1630 Query 81613 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 81672 || ||||| || || || | ||||| || ||||| ||||||||||| |||||||| || Sbjct 1631 TGTTGCAGCACCACCGCGTACACCACCTTGAGAACAAGATTTAACTGCGGTCTGAAAGTG 1690 Query 81673 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 81732 ||| |||| || ||| ||| ||||| |||| || | || | |||| | | Sbjct 1691 TTTATAAAATGGGATACAACCCGTATGAAAAGCTTCGCC---GTCACGTATCGAACTTCC 1747 Query 81733 ---AGCACGAATCATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAAC 81789 |||||||| ||| | ||||| ||||| ||||| |||| |||| ||||| || Sbjct 1748 CAAGGCACGAATTCGACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTTCAC 1807 Query 81790 AATTGAAGCAGAAGCTTTATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCA 81849 ||||| | |||| | |||||| || | | |||||| | ||||| | ||||| Sbjct 1808 AATTGCACTTGAAGTTGCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTACGCA 1867 Query 81850 TGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 81909 ||||| ||||| ||| | || || || ||| | ||| || || || ||||| ||||| Sbjct 1868 GGAACTGAACTGGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTGGGCAAAGAAAT 1927 >seq66660 Length=2041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 12785 GCTCTACCAAACTGAGCTACA-CGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGAA 12843 |||||||| | || ||||| | | | || |||| ||||||||| | | |||||||| Sbjct 1055 GCTCTACCGA-CTAAGCTATATCAGCGTGGTTTAATTTGGAGCGGGCAGCGGGAATCGAA 997 Query 12844 CTCACATCATCAGATTGGAAGTCTGAGGTAAT-ACCATTATACGATATCCGCA 12895 | | | ||||||| ||||||| |||||||||| ||||||||||||| ||||| Sbjct 996 CCCGCGTCATCAGCTTGGAAGGCTGAGGTAATAACCATTATACGATGCCCGCA 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535318017099840