Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq66944 223 4e-53 >seq66944 Length=5658 Score = 223 bits (246), Expect = 4e-53 Identities = 854/1321 (65%), Gaps = 54/1321 (4%) Strand=Plus/Minus Query 18306 TTTGCCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGTGT 18365 |||||| || ||||| ||| | || || ||||| || | ||||||||| ||| || Sbjct 1922 TTTGCCCACACCAATCATGTCCGGTGTACGCACACCTATTCGCCAGTTCAGTTCCTGCGT 1863 Query 18366 TAAGATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAA 18425 ||||| |||||| |||||||| || ||||| | | | | ||| | || || Sbjct 1862 ACTAATTGAGTCCGGTGATAGCCTCGATTCGATTAATGCAACTTCAAGTGCAATTGTGAA 1803 Query 18426 TTATATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAG 18485 ||| || |||| |||||||| || ||||| || |||||||||||||| ||||| Sbjct 1802 ATATGTTTCCCAACGGGCTGGTATTGGCATTAATGCCGGTCGAATTCGTGCCTTGGGAAG 1743 Query 18486 TCAAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCA 18545 | | || || |||| || || ||| ||| ||||| | ||||| || || Sbjct 1742 TTCGATACGTGACGGCGAAGCTTTTCATACGGGTTGTATCCCATTTTATAAACACTTTCA 1683 Query 18546 GACTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTA 18605 ||| || |||||||| ||||| ||||| ||||| || |||||||| ||||| || | || Sbjct 1682 GACCGCAGTTAAATCTTGTTCTCAAGGTGGTGTACGCGGTGGTGCTGCAACACTATTCTA 1623 Query 18606 TCCTATGTGGCATCTTGAATTCGAAAAGCTGATTGTTCT-GAAAAATAACAAAGGTGTTG 18664 ||| || ||||| | ||| | |||| | | | || ||| ||| |||||| || || | Sbjct 1622 TCCAATATGGCACTTGGAAGTGGAAA-GTTTACTGGTCTTGAAGAATAACCGTGGCGTAG 1564 Query 18665 ATGAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAAC 18724 | || ||||| ||||||| | || |||||| | ||| | ||||||||||||| | | Sbjct 1563 AAGATAACCGTGTTCGTCACATGGACTATGGTGTTCAATTGAATAAACTGATGTATCAGC 1504 Query 18725 GTTTGGTTGCC---GATGATTATGTAACTCTGTTCAGTC---CAGACGTTGCAGCCGGTC 18778 | | | || || || || | ||||| || |||| |||| || ||| Sbjct 1503 GCCTACT--CCAGGGAAGA-GATATTACTCTATTTAGTCCGTCAGATGTGCCAG------ 1453 Query 18779 GCCTGTACGATTATTTCTTTGAAGATGAAGCGAAGTTCAAAGAACTGTATGAAACGCTGG 18838 | || |||||| ||||||| ||| | | | || || |||||| || | Sbjct 1452 GTCTATACGATGCATTCTTTGCTGATCAGGAAGAATTTGAACTCCTGTATACAAAATATG 1393 Query 18839 AAAAAGATCCTACGATTCGTAAGAAGCGTATCAAAGCGCGTGAC--ATTTTCACGACTGC 18896 ||||| || | || || || | || | ||||| |||| ||||||| | || Sbjct 1392 AAAAAAATGACAACATCCGAAAACAAAGTTTAAAAGCCATTGACCTATTTTCATTAATG- 1334 Query 18897 AATGATGGAAAGAGCTAACACTGGTCGCGTTTATATTCAGTTTG-TGACCAACGTTA-AC 18954 ||| ||| | || || ||||| | ||||| ||| | |||||| | | || Sbjct 1333 -ATGCAAGAACGCGCATCAACCGGTCGTATATATATCCAGAACGTTGACCACTGCAATAC 1275 Query 18955 GAAAACAGTCCTTTCGATGAACCTATT---------AAGATGTCCAACTTGTGTGTTGAG 19005 | | || || || || | | ||| | ||||||||| || | || Sbjct 1274 G--CATAGCCCGTTTAATCCAGCCATTGCTCCAGTGCACCAGTCCAACTTATGCTTGGAA 1217 Query 19006 ATTTGTTTACCGACTTATCCAAT-CACG--AAGAATATCGAAGAATCCGAGATTGCTCTG 19062 ||| ||||| ||| | ||| | | | | ||| ||| | ||| ||||| || Sbjct 1216 ATTGTCTTACCAACTAAACCACTGCTAGATATTAATGATGAAAATGGCGAAATTGCCCTT 1157 Query 19063 TGTACTCTGTCGGCGTTCAATCTTGGTAAAATTGAAAGTCTTCATGATTTCGAAAAAGCT 19122 |||||||| || || |||||||| ||| ||||||| || ||||| | | | || | Sbjct 1156 TGTACTCTATCAGCATTCAATCTCGGTGCCATTGAAAAGCTAGATGATCT-GCAGGAGTT 1098 Query 19123 GCCCGCG-TTGCTGTTCGAGCACTGGATAACCTGCTTGATTATCAAGAATATCCGATGGA 19181 || || | | ||| || ||||| ||| | | ||||| || ||||| ||||| || Sbjct 1097 AGCCACGCTAGGTGTACGCGCACTAGATGCCTTACTTGACTACCAAGATTATCCTATTCC 1038 Query 19182 AGCAGCATTAAA-----AGGTCTGAAACGTCGTTCATTAGGAATCGGTATTACCAACTTT 19236 || || |||| | | || || ||| | ||||| |||||| | | |||| | Sbjct 1037 GGCTGC--TAAACGTAGTGCTATGGGCCGACGTACTTTAGGTATCGGTGTAATTAACTAT 980 Query 19237 GCTTATTATCTCGCGAAAAATTACGTGAAATATTCAGACGGTTCAGCTAATGAATTGGTT 19296 || |||||||| || |||||| || ||||| || ||| ||||| ||| | Sbjct 979 GCATATTATCTAGCCAAAAATGGTATGCGCTATTCTGATGGTAGCGCTAACGAACTAACG 920 Query 19297 CACGAAATGATGGAAGCATTCCAGTATTATCTGCTTAAAGCTTCGATGGAATTAGCAAAA 19356 || ||| | || || | ||||| | || | ||| || | || | |||| Sbjct 919 CATCAAACTTTTGAGGCGATACAGTACTGGTTGTTGCGAGCGTCTAACGAGCTGGCAATG 860 Query 19357 GAGCGTGGTGCTTGTGAATATTTCCACAAAACGTCATATTCTCGCGGCGTTCTACCGATT 19416 || || |||||||| || ||| | |||| ||||| | || |||| || ||| Sbjct 859 GAACGGGGTGCTTGCCCATGGTTCAATGAAACTAGGTATTCCCAAGGGATTCTGCCCATT 800 Query 19417 GATCGATACAAGAAAACTGTTGACAATCTTGTTGATCCAGTGTATCGTATGGACTGGGAA 19476 ||| || || ||| ||| |||| | | || || | || | ||||||||||| Sbjct 799 GATACCTATAAAAAAGATGTAGACACTATCAGCAATACACCGCTTCTTTTGGACTGGGAA 740 Query 19477 GCGCTTCGTGCCGACATC-ATGAAA---TATGGTCTTCGTAACTCTACGTTGTCAGCGCT 19532 | || || ||| ||| || ||| || ||||| ||||||||||| | || || || Sbjct 739 GAACTACG---CGA-ATCAATTAAAGTCTACGGTCTACGTAACTCTACTCTATCTGCACT 684 Query 19533 GATGCCTTGTGAATCAAGTTCACAGATCACCAACTCCACGAACGGTATCGAGCCGCCTCG 19592 |||||||| |||| || || ||||| | ||| | || || ||||| || || ||||| Sbjct 683 GATGCCTTCTGAAACATCATCGCAGATATCTAACGCGACCAATGGTATTGAACCACCTCG 624 Query 19593 T 19593 | Sbjct 623 T 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582248308241600