Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq66944 196 5e-45 seq66660 86.0 7e-12 >seq66944 Length=5658 Score = 196 bits (216), Expect = 5e-45 Identities = 296/420 (70%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 43552 CATTAGATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACC 43611 ||| || | ||||| |||||||||||| ||||| ||||||| ||||| |||||||| || Sbjct 1511 CATCAGTTTATTCAATTGAACACCATAGTCCATGTGACGAACACGGTTATCTTCTACGCC 1570 Query 43612 TTTGTTATTTTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 43671 |||||| ||||| || || | | |||| |||||||| ||||| || ||||| | Sbjct 1571 ACGGTTATTCTTCAAGACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGATAGAATAG 1630 Query 43672 AGTAGCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATG 43731 || ||||| || || || | |||||||| || || |||||||| || |||||||| || Sbjct 1631 TGTTGCAGCACCACCGCGTACACCACCTTGAGAACAAGATTTAACTGCGGTCTGAAAGTG 1690 Query 43732 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 43791 ||| |||| || ||| ||| ||||| |||| || | || | |||| | | Sbjct 1691 TTTATAAAATGGGATACAACCCGTATGAAAAGCTTCGCC---GTCACGTATCGAACTTCC 1747 Query 43792 ---GGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAAC 43848 ||||||||| ||| | ||||| ||||| ||||| |||| ||| | ||||| || Sbjct 1748 CAAGGCACGAATTCGACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATATTTCAC 1807 Query 43849 AATTGAAGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACA 43908 ||||| | |||| ||| || || | | |||||| | |||||| | || || Sbjct 1808 AATTGCACTTGAAGTTGCATTAATCGAATCGAGGCTATCACCGGACTCAATTAGTACGCA 1867 Query 43909 TGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 43968 ||||| ||||| ||| | || || || ||| | ||| || || || || || ||||| Sbjct 1868 GGAACTGAACTGGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTGGGCAAAGAAAT 1927 >seq66660 Length=2041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 140715 GCTCTACCAAACTGAGCTACA-CGGAGTAAATTAAATTGGAGCGGATAATGAGAATCGAA 140773 |||||||| | || ||||| | | | || |||| ||||||||| | | |||||||| Sbjct 1055 GCTCTACCGA-CTAAGCTATATCAGCGTGGTTTAATTTGGAGCGGGCAGCGGGAATCGAA 997 Query 140774 CTCACATCATCAGATTGGAAGTCTGAGGTAAT-ACCATTATACGATATCCGCA 140825 | | | ||||||| ||||||| |||||||||| ||||||||||||| ||||| Sbjct 996 CCCGCGTCATCAGCTTGGAAGGCTGAGGTAATAACCATTATACGATGCCCGCA 944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534777669695360