Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trupanea_20jonesi_20[genbank_20GCA_5F001014665.1_202015-05-28] 66,952 sequences; 97,281,263 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq66944 215 6e-51 >seq66944 Length=5658 Score = 215 bits (238), Expect = 6e-51 Identities = 324/458 (71%), Gaps = 12/458 (3%) Strand=Plus/Plus Query 77166 CGCTTATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTC 77225 |||| |||||||| | || | ||||| ||||| |||| |||||||| |||||||| Sbjct 1503 CGCTGATACATCAGTTTATTCAATTGAACACCATAGTCCATGTGACGAACACGGTTATCT 1562 Query 77226 TCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGA 77285 || || || ||| || |||| ||||| | |||| |||||||| ||||| || ||| Sbjct 1563 TCTACGCCACGGTTATTCTTCAAGACCAGTAAACTTTCCACTTCCAAGTGCCATATTGGA 1622 Query 77286 TAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTC 77345 || | | |||||||||||||| || || |||||||| ||||| |||||||| || ||| Sbjct 1623 TAGAATAGTGTTGCAGCACCACCGCGTACACCACCTTGAGAACAAGATTTAACTGCGGTC 1682 Query 77346 TGAATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTA 77405 |||| ||||| | || ||||| || ||||| | ||||| || |||| || | Sbjct 1683 TGAAAGTGTTTATAAAATGGGATACAACCCGTATGAAAAGCTTCGCCGTCACGTATCGAA 1742 Query 77406 GAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATAC 77465 |||| || ||||| | || ||||||| || ||||| || ||||| |||| ||| Sbjct 1743 CTTCCCAAGGCACGAATTCGACCGGCATTAATGCCAATACCAGCCCGTTGGGAAACATAT 1802 Query 77466 TTCACGATCGCA---GAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATC 77522 ||||| || ||| || ||| ||||| | ||| | || |||||| || ||||| Sbjct 1803 TTCACAATTGCACTTGAAGTT---GCATTAATCGAATCGAGGCTATCACCGGACTCAATT 1859 Query 77523 ACTACGC---AACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTA 77579 | ||||| ||||| ||||| || |||| || || ||||| | ||| || || || Sbjct 1860 AGTACGCAGGAACTG---AACTGGCGAATAGGTGTGCGTACACCGGACATGATTGGTGTG 1916 Query 77580 GGTAACGACAGCTTACGATCCGAAATTGCGTTGTAGAA 77617 || || || | ||| | ||||| || | |||||| Sbjct 1917 GGCAAAGAAATTTTAAAAGTTGAAATAGCATCGTAGAA 1954 Score = 93.3 bits (102), Expect = 5e-14 Identities = 260/392 (66%), Gaps = 14/392 (4%) Strand=Plus/Plus Query 75994 CTGCACCGTCGCGGGTGTTGTGATAATACAGAGTTTTCACGCCGTAGTAGTTCGCATAAA 76053 ||||||| || ||||| || ||||| ||||||||||| ||||| | | | ||| || Sbjct 325 CTGCACCATCCCGGGTATTTTGATAGTACAGAGTTTTTACGCCAAACTTATAGGCAGTAA 384 Query 76054 GCAGGTCATCAATGA-TGGTTTCAGATTTCACTTTACCATCTGGGAAGTTAGCCGGATCA 76112 |||| || | || | | |||||| | |||||||||| ||| |||||| Sbjct 385 GCAGATCTTTAAGTAGTTGTTTCATTGGT-ACTTTACCATTAACAAAGCGCATTGGATCA 443 Query 76113 TAGTTGGTGTTTGCAGAGATCGCTTGATCAACAAACTTCTGCATAACAGCAACATGAGAC 76172 ||||| || || | || || |||||||| | |||||||||||| | | |||| | Sbjct 444 TAGTTAGTATTAGATGAAATTGCTTGATCGATAAACTTCTGCATCAGACCAACCAGCTGT 503 Query 76173 AGATAACCTTTATTACCGCGTTTTGCCATTGTCCAGAGATAATCATAGAAATCAATCTGG 76232 | |||||| | |||| |||| ||| ||| || ||||| ||| | | | Sbjct 504 AAATAACCATCATTA------TTTGGCATATCCCACAGCATTTCATAACTATC-TTTTAG 556 Query 76233 TCGTTC-TGGTTCGGTACTACCTG--GTTGAATGAACCTTCTTTCGAAGATTTCACACTC 76289 || || | | |||||| || || | ||||| || ||||| || | ||| | || Sbjct 557 ACGCTCATATTCCGGTACGACTTGGCGAAGAATG--CCATCTTTTGATGCTTTAATGCTG 614 Query 76290 ACAGGGCCGCGAGGCGGTTCAATCCCGTTTGTTGAGTTGCTTACTTGAGAACTACTCTCA 76349 | | | || ||||| |||||||| || || || | ||| || || || | ||| Sbjct 615 ATATGACCACGAGGTGGTTCAATACCATTGGTCGCGTTAGATATCTGCGATGATGTTTCA 674 Query 76350 CATGGCATTAAAGCAGAAAGAGTTGAGTTACG 76381 | ||||| | ||||| ||||| |||||||| Sbjct 675 GAAGGCATCAGTGCAGATAGAGTAGAGTTACG 706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567997844444160